diff qiime2/qiime_feature-table_tabulate-seqs.xml @ 0:370e0b6e9826 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_feature-table_tabulate-seqs.xml	Wed Jul 17 03:05:17 2019 -0400
@@ -0,0 +1,44 @@
+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2019.4">
+	<description> - View sequence associated with each feature</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime feature-table tabulate-seqs
+
+--i-data=$idata
+
+--o-visualization=ovisualization
+;
+qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
+&& cp -r out/* '$ovisualization.files_path'
+&& mv '$ovisualization.files_path/index.html' '$ovisualization';
+	]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-data: ARTIFACT FeatureData[Sequence] The feature sequences to be tabulated.       [required]" name="idata" optional="False" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
+	</outputs>
+	<help><![CDATA[
+View sequence associated with each feature
+##########################################
+
+Generate tabular view of feature identifier to sequence mapping, including
+links to BLAST each sequence against the NCBI nt database.
+
+Parameters
+----------
+data : FeatureData[Sequence]
+    The feature sequences to be tabulated.
+
+Returns
+-------
+visualization : Visualization
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>