diff qiime2/qiime_feature-table_relative-frequency.xml @ 29:3ba9833030c1 draft

Uploaded
author florianbegusch
date Fri, 04 Sep 2020 13:12:49 +0000
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+++ b/qiime2/qiime_feature-table_relative-frequency.xml	Fri Sep 04 13:12:49 2020 +0000
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+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_relative-frequency" name="qiime feature-table relative-frequency"
+      version="2020.8">
+  <description>Convert to relative frequencies</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime feature-table relative-frequency
+
+--i-table=$itable
+
+--o-relative-frequency-table=orelativefrequencytable
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp orelativefrequencytable.qza $orelativefrequencytable
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be converted into relative frequencies.                                 [required]" name="itable" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: relativefrequencytable.qza" name="orelativefrequencytable" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Convert to relative frequencies
+###############################################################
+
+Convert frequencies to relative frequencies by dividing each frequency in a
+sample by the sum of frequencies in that sample.
+
+Parameters
+----------
+table : FeatureTable[Frequency]
+    The feature table to be converted into relative frequencies.
+
+Returns
+-------
+relative_frequency_table : FeatureTable[RelativeFrequency]
+    The resulting relative frequency feature table.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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