Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_diversity_core-metrics.xml @ 4:914fa4daf16a draft
Fixes
author | florianbegusch |
---|---|
date | Wed, 31 Jul 2019 03:06:00 -0400 |
parents | 51025741f326 |
children | de4c22a52df4 |
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--- a/qiime2/qiime_diversity_core-metrics.xml Sun Jul 21 02:21:34 2019 -0400 +++ b/qiime2/qiime_diversity_core-metrics.xml Wed Jul 31 03:06:00 2019 -0400 @@ -19,11 +19,10 @@ #def list_dict_to_string(list_dict): #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') #for d in list_dict[1:]: - #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') + #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') #end for #return $file_list #end def - --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) #end if @@ -57,7 +56,7 @@ <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table containing the samples over which diversity metrics should be computed. [required]" name="itable" optional="False" type="data"/> <param label="--p-sampling-depth: INTEGER Range(1, None) The total frequency that each sample should be rarefied to prior to computing diversity metrics. [required]" name="psamplingdepth" optional="False" min="1" value="" type="integer"/> - <repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file"> + <repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file [required]"> <param label="--m-metadata-file: METADATA... (multiple arguments will be merged) The sample metadata to use in the emperor plots. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> </repeat>