diff qiime2/qiime_deblur_visualize-stats.xml @ 14:a0a8d77a991c draft

Uploaded

--- a/qiime2/qiime_deblur_visualize-stats.xml	Thu Sep 03 09:46:00 2020 +0000
+++ b/qiime2/qiime_deblur_visualize-stats.xml	Thu Sep 03 09:51:29 2020 +0000
@@ -1,29 +1,45 @@
 <?xml version="1.0" ?>
-<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2019.7">
-	<description> - Visualize Deblur stats per sample.</description>
-	<requirements>
-		<requirement type="package" version="2019.7">qiime2</requirement>
-	</requirements>
-	<command><![CDATA[
+<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats"
+      version="2020.8">
+  <description>Visualize Deblur stats per sample.</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
 qiime deblur visualize-stats
 
 --i-deblur-stats=$ideblurstats
 
 --o-visualization=ovisualization
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
 ;
-qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
+cp ostats.qza $ostats
+
+;
+qiime tools export  ovisualization.qzv --output-path out
+&& mkdir -p '$ovisualization.files_path'
 && cp -r out/* '$ovisualization.files_path'
-&& mv '$ovisualization.files_path/index.html' '$ovisualization';
-	]]></command>
-	<inputs>
-		<param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats        Summary statistics of the Deblur process.    [required]" name="ideblurstats" optional="False" type="data"/>
-	</inputs>
-	<outputs>
-		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
-	</outputs>
-	<help><![CDATA[
+&& mv '$ovisualization.files_path/index.html' '$ovisualization'
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats        Summary statistics of the Deblur process.    [required]" name="ideblurstats" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
+    
+  </outputs>
+
+  <help><![CDATA[
 Visualize Deblur stats per sample.
-##################################
+###############################################################
 
 Display Deblur statistics per sample
 
@@ -35,9 +51,9 @@
 Returns
 -------
 visualization : Visualization
-	]]></help>
-<macros>
+  ]]></help>
+  <macros>
     <import>qiime_citation.xml</import>
-</macros>
-<expand macro="qiime_citation"/>
-</tool>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
\ No newline at end of file