diff qiime2/qiime_diversity_procrustes-analysis.xml @ 14:a0a8d77a991c draft

Uploaded

--- a/qiime2/qiime_diversity_procrustes-analysis.xml	Thu Sep 03 09:46:00 2020 +0000
+++ b/qiime2/qiime_diversity_procrustes-analysis.xml	Thu Sep 03 09:51:29 2020 +0000
@@ -1,37 +1,48 @@
 <?xml version="1.0" ?>
-<tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" version="2019.7">
-	<description> - Procrustes Analysis</description>
-	<requirements>
-		<requirement type="package" version="2019.7">qiime2</requirement>
-	</requirements>
-	<command><![CDATA[
+<tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis"
+      version="2020.8">
+  <description>Procrustes Analysis</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
 qiime diversity procrustes-analysis
 
 --i-reference=$ireference
+
 --i-other=$iother
 
-#if str($pdimensions):
- --p-dimensions=$pdimensions
-#end if
+--p-dimensions=$pdimensions
 
 --o-transformed-reference=otransformedreference
+
 --o-transformed-other=otransformedother
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
 ;
-cp otransformedreference.qza $otransformedreference;
 cp otransformedother.qza $otransformedother
-	]]></command>
-	<inputs>
-		<param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT  The ordination matrix to which data is fitted to. PCoAResults                                                     [required]" name="ireference" optional="False" type="data"/>
-		<param format="qza,no_unzip.zip" label="--i-other: ARTIFACT      The ordination matrix that's fitted to the PCoAResults           reference ordination.                     [required]" name="iother" optional="False" type="data"/>
-		<param label="--p-dimensions: INTEGER Range(1, None)                                                [default: 5]" name="pdimensions" optional="True" type="integer" min="1" value="5"/>
-	</inputs>
-	<outputs>
-		<data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference"/>
-		<data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother"/>
-	</outputs>
-	<help><![CDATA[
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT  The ordination matrix to which data is fitted to. PCoAResults                                                     [required]" name="ireference" optional="False" type="data" />
+    <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT      The ordination matrix that\'s fitted to the PCoAResults           reference ordination.                     [required]" name="iother" optional="False" type="data" />
+    <param label="--p-dimensions: INTEGER Range(1, None)                                                [default: 5]" min="1" name="pdimensions" optional="True" type="integer" value="5" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference" />
+    <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother" />
+    
+  </outputs>
+
+  <help><![CDATA[
 Procrustes Analysis
-###################
+###############################################################
 
 Fit two ordination matrices with Procrustes analysis
 
@@ -42,7 +53,6 @@
 other : PCoAResults
     The ordination matrix that's fitted to the reference ordination.
 dimensions : Int % Range(1, None), optional
-	\
 
 Returns
 -------
@@ -50,9 +60,9 @@
     A normalized version of the "reference" ordination matrix.
 transformed_other : PCoAResults
     A normalized and fitted version of the "other" ordination matrix.
-	]]></help>
-<macros>
+  ]]></help>
+  <macros>
     <import>qiime_citation.xml</import>
-</macros>
-<expand macro="qiime_citation"/>
-</tool>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
\ No newline at end of file