diff qiime2/qiime_feature-table_merge-taxa.xml @ 14:a0a8d77a991c draft

Uploaded

--- a/qiime2/qiime_feature-table_merge-taxa.xml	Thu Sep 03 09:46:00 2020 +0000
+++ b/qiime2/qiime_feature-table_merge-taxa.xml	Thu Sep 03 09:51:29 2020 +0000
@@ -1,40 +1,49 @@
 <?xml version="1.0" ?>
-<tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa" version="2019.7">
-	<description> - Combine collections of feature taxonomies</description>
-	<requirements>
-		<requirement type="package" version="2019.7">qiime2</requirement>
-	</requirements>
-	<command><![CDATA[
+<tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa"
+      version="2020.8">
+  <description>Combine collections of feature taxonomies</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
 qiime feature-table merge-taxa
-
+# if $input_files_idata:
+  # def list_dict_to_string(list_dict):
+    # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
+    # for d in list_dict[1:]:
+      # set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
+    # end for
+    # return $file_list
+  # end def
+--i-data=$list_dict_to_string($input_files_idata)
+# end if
 
-#if $input_files_idata:
-#def list_dict_to_string(list_dict):
-	#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
-	#for d in list_dict[1:]:
-		#set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
-	#end for
-	#return $file_list
-#end def
- --i-data=$list_dict_to_string($input_files_idata)
+--o-merged-data=omergeddata
+
+#if str($examples) != 'None':
+--examples=$examples
 #end if
 
-
---o-merged-data=omergeddata
 ;
 cp omergeddata.qza $omergeddata
-	]]></command>
-	<inputs>
-		<repeat name="input_files_idata" optional="False" title="--i-data">
-			<param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged.  [required]" name="additional_input" type="data"/>
-		</repeat>
-	</inputs>
-	<outputs>
-		<data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata"/>
-	</outputs>
-	<help><![CDATA[
+
+  ]]></command>
+  <inputs>
+    <repeat name="input_files_idata" optional="False" title="--i-data">
+      <param format="qza,no_unzip.zip" label="--i-data: ARTIFACTS... List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. [required]" name="additional_input" optional="False" type="data" />
+    </repeat>
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata" />
+    
+  </outputs>
+
+  <help><![CDATA[
 Combine collections of feature taxonomies
-#########################################
+###############################################################
 
 Combines a pair of feature data objects which may or may not contain data
 for the same features. If different feature data is present for the same
@@ -51,9 +60,9 @@
 merged_data : FeatureData[Taxonomy]
     The resulting collection of feature taxonomies containing all feature
     taxonomies provided.
-	]]></help>
-<macros>
+  ]]></help>
+  <macros>
     <import>qiime_citation.xml</import>
-</macros>
-<expand macro="qiime_citation"/>
-</tool>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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