diff qiime2/qiime_sample-classifier_summarize.xml @ 14:a0a8d77a991c draft

Uploaded

--- a/qiime2/qiime_sample-classifier_summarize.xml	Thu Sep 03 09:46:00 2020 +0000
+++ b/qiime2/qiime_sample-classifier_summarize.xml	Thu Sep 03 09:51:29 2020 +0000
@@ -1,29 +1,46 @@
 <?xml version="1.0" ?>
-<tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize" version="2019.7">
-	<description> - Summarize parameter and feature extraction information for a trained estimator.</description>
-	<requirements>
-		<requirement type="package" version="2019.7">qiime2</requirement>
-	</requirements>
-	<command><![CDATA[
-qiime sample-classifier summarize 
+<tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize"
+      version="2020.8">
+  <description>Summarize parameter and feature extraction information for a trained estimator.</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime sample-classifier summarize
 
 --i-sample-estimator=$isampleestimator
 
 --o-visualization=ovisualization
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
 ;
-qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
+cp otesttable.qza $otesttable
+
+;
+qiime tools export  ovisualization.qzv --output-path out
+&& mkdir -p '$ovisualization.files_path'
 && cp -r out/* '$ovisualization.files_path'
 && mv '$ovisualization.files_path/index.html' '$ovisualization'
-	]]></command>
-	<inputs>
-		<param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor.                               [required]" name="isampleestimator" optional="False" type="data"/>
-	</inputs>
-	<outputs>
-		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
-	</outputs>
-	<help><![CDATA[
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor.                               [required]" name="isampleestimator" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
+    
+  </outputs>
+
+  <help><![CDATA[
 Summarize parameter and feature extraction information for a trained estimator.
-###############################################################################
+###############################################################
+
 
 Summarize parameter and feature extraction information for a trained
 estimator.
@@ -36,9 +53,9 @@
 Returns
 -------
 visualization : Visualization
-	]]></help>
-<macros>
+  ]]></help>
+  <macros>
     <import>qiime_citation.xml</import>
-</macros>
-<expand macro="qiime_citation"/>
-</tool>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
\ No newline at end of file