diff qiime2-2020.8/qiime_diversity_procrustes-analysis.xml @ 20:d93d8888f0b0 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2-2020.8/qiime_diversity_procrustes-analysis.xml	Fri Sep 04 12:44:24 2020 +0000
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+<?xml version="1.0" ?>
+<tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis"
+      version="2020.8">
+  <description>Procrustes Analysis</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime diversity procrustes-analysis
+
+--i-reference=$ireference
+
+--i-other=$iother
+
+--p-dimensions=$pdimensions
+
+--o-transformed-reference=otransformedreference
+
+--o-transformed-other=otransformedother
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp otransformedother.qza $otransformedother
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT  The ordination matrix to which data is fitted to. PCoAResults                                                     [required]" name="ireference" optional="False" type="data" />
+    <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT      The ordination matrix that\'s fitted to the PCoAResults           reference ordination.                     [required]" name="iother" optional="False" type="data" />
+    <param label="--p-dimensions: INTEGER Range(1, None)                                                [default: 5]" min="1" name="pdimensions" optional="True" type="integer" value="5" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference" />
+    <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Procrustes Analysis
+###############################################################
+
+Fit two ordination matrices with Procrustes analysis
+
+Parameters
+----------
+reference : PCoAResults
+    The ordination matrix to which data is fitted to.
+other : PCoAResults
+    The ordination matrix that's fitted to the reference ordination.
+dimensions : Int % Range(1, None), optional
+
+Returns
+-------
+transformed_reference : PCoAResults
+    A normalized version of the "reference" ordination matrix.
+transformed_other : PCoAResults
+    A normalized and fitted version of the "other" ordination matrix.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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