diff qiime2-2020.8/qiime_feature-table_subsample.xml @ 20:d93d8888f0b0 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2-2020.8/qiime_feature-table_subsample.xml	Fri Sep 04 12:44:24 2020 +0000
@@ -0,0 +1,71 @@
+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_subsample" name="qiime feature-table subsample"
+      version="2020.8">
+  <description>Subsample table</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime feature-table subsample
+
+--i-table=$itable
+
+--p-subsampling-depth=$psubsamplingdepth
+
+--p-axis=$paxis
+
+--o-sampled-table=osampledtable
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp osampledtable.qza $osampledtable
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled.             [required]" name="itable" optional="False" type="data" />
+    <param label="--p-subsampling-depth: INTEGER Range(1, None)     The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" type="text" />
+    <param label="--p-axis: " name="paxis" optional="False" type="select">
+      <option value="sample">sample</option>
+      <option value="feature">feature</option>
+    </param>
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Subsample table
+###############################################################
+
+Randomly pick samples or features, without replacement, from the table.
+
+Parameters
+----------
+table : FeatureTable[Frequency]
+    The feature table to be sampled.
+subsampling_depth : Int % Range(1, None)
+    The total number of samples or features to be randomly sampled. Samples
+    or features that are reduced to a zero sum will not be included in the
+    resulting table.
+axis : Str % Choices('sample', 'feature')
+    The axis to sample over. If "sample" then samples will be randomly
+    selected to be retained. If "feature" then a random set of features
+    will be selected to be retained.
+
+Returns
+-------
+sampled_table : FeatureTable[Frequency]
+    The resulting subsampled feature table.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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