Mercurial > repos > florianbegusch > qiime2_suite

diff qiime2/qiime_diversity_core-metrics-phylogenetic.xml @ 6:de4c22a52df4 draft

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:46:48 -0400
parents 914fa4daf16a
children f190567fe3f6
line wrap: on
line diff
--- a/qiime2/qiime_diversity_core-metrics-phylogenetic.xml	Mon Aug 05 01:29:30 2019 -0400
+++ b/qiime2/qiime_diversity_core-metrics-phylogenetic.xml	Tue Aug 13 07:46:48 2019 -0400
@@ -9,7 +9,10 @@
 
 --i-table=$itable
 --i-phylogeny=$iphylogeny
---p-sampling-depth="$psamplingdepth"
+
+#if str($psamplingdepth):
+ --p-sampling-depth="$psamplingdepth"
+#end if
 
 #set $pnjobs = '${GALAXY_SLOTS:-4}'
 #if str($pnjobs):
@@ -21,7 +24,7 @@
 #def list_dict_to_string(list_dict):
 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
 #for d in list_dict[1:]:
-	#set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
+	#set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
 #end for
 #return $file_list
 #end def