Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_demux_subsample-paired.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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<?xml version="1.0" ?> <tool id="qiime_demux_subsample-paired" name="qiime demux subsample-paired" version="2019.4"> <description> - Subsample paired-end sequences without replacement.</description> <requirements> <requirement type="package" version="2019.4">qiime2</requirement> </requirements> <command><![CDATA[ qiime demux subsample-paired --i-sequences=$isequences --p-fraction="$pfraction" --o-subsampled-sequences=osubsampledsequences ; cp osubsampledsequences.qza $osubsampledsequences ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT SampleData[PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. [required]" name="isequences" optional="False" type="data"/> <param label="--p-fraction: PROPORTION Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. [required]" name="pfraction" optional="False" exclude_min="True" min="0" max="1" value="" type="float"/> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: subsampledsequences.qza" name="osubsampledsequences"/> </outputs> <help><![CDATA[ Subsample paired-end sequences without replacement. ################################################### Generate a random subsample of paired-end sequences containing approximately the fraction of input sequences specified by the fraction parameter. The number of output samples will always be equal to the number of input samples, even if some of those samples contain no sequences after subsampling. Parameters ---------- sequences : SampleData[PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. fraction : Float % Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. Returns ------- subsampled_sequences : SampleData[PairedEndSequencesWithQuality] The subsampled sequences. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>