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view qiime2/qiime_deblur_visualize-stats.xml @ 3:558645416841 draft

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author florianbegusch
date Sun, 21 Jul 2019 02:21:34 -0400
parents 370e0b6e9826
children f190567fe3f6
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<?xml version="1.0" ?>
<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2019.4">
	<description> - Visualize Deblur stats per sample.</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime deblur visualize-stats

--i-deblur-stats=$ideblurstats

--o-visualization=ovisualization
;
qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization';
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats        Summary statistics of the Deblur process.    [required]" name="ideblurstats" optional="False" type="data"/>
	</inputs>
	<outputs>
		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
	</outputs>
	<help><![CDATA[
Visualize Deblur stats per sample.
##################################

Display Deblur statistics per sample

Parameters
----------
deblur_stats : DeblurStats
    Summary statistics of the Deblur process.

Returns
-------
visualization : Visualization
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>