view qiime2/qiime_feature-table_subsample.xml @ 3:558645416841 draft

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<?xml version="1.0" ?>
<tool id="qiime_feature-table_subsample" name="qiime feature-table subsample" version="2019.4">
	<description> - Subsample table</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime feature-table subsample

--i-table=$itable
--p-subsampling-depth="$psubsamplingdepth"
--p-axis=$paxis

--o-sampled-table=osampledtable
;
cp osampledtable.qza $osampledtable
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled.             [required]" name="itable" optional="False" type="data"/>
		<param label="--p-subsampling-depth: INTEGER Range(1, None)     The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" min="1" value="" type="integer"/>
		<param label="--p-axis: " name="paxis" optional="False" type="select">
			<option value="sample">sample</option>
			<option value="feature">feature</option>
		</param>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable"/>
	</outputs>
	<help><![CDATA[
Subsample table
###############

Randomly pick samples or features, without replacement, from the table.

Parameters
----------
table : FeatureTable[Frequency]
    The feature table to be sampled.
subsampling_depth : Int % Range(1, None)
    The total number of samples or features to be randomly sampled. Samples
    or features that are reduced to a zero sum will not be included in the
    resulting table.
axis : Str % Choices('sample', 'feature')
    The axis to sample over. If "sample" then samples will be randomly
    selected to be retained. If "feature" then a random set of features
    will be selected to be retained.

Returns
-------
sampled_table : FeatureTable[Frequency]
    The resulting subsampled feature table.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>