view qiime2/qiime_phylogeny_fasttree.xml @ 5:a025a4a89e07 draft

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<?xml version="1.0" ?>
<tool id="qiime_phylogeny_fasttree" name="qiime phylogeny fasttree" version="2019.4">
	<description> - Construct a phylogenetic tree with FastTree.</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime phylogeny fasttree

--i-alignment=$ialignment

#set $pnthreads = '${GALAXY_SLOTS:-4}'
#if str($pnthreads):
 --p-n-threads="$pnthreads"
#end if

--o-tree=otree
;
cp otree.qza $otree
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-alignment: ARTIFACT FeatureData[AlignedSequence] Aligned sequences to be used for phylogenetic reconstruction.                           [required]" name="ialignment" optional="False" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: tree.qza" name="otree"/>
	</outputs>
	<help><![CDATA[
Construct a phylogenetic tree with FastTree.
############################################

Construct a phylogenetic tree with FastTree.

Parameters
----------
alignment : FeatureData[AlignedSequence]
    Aligned sequences to be used for phylogenetic reconstruction.

Returns
-------
tree : Phylogeny[Unrooted]
    The resulting phylogenetic tree.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>