Mercurial > repos > florianbegusch > qiime2_suite
view qiime2-2020.8/qiime_phylogeny_filter-table.xml @ 21:a98d7ab297f1 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:46:48 +0000 |
parents | d93d8888f0b0 |
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<?xml version="1.0" ?> <tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table" version="2020.8"> <description>Remove features from table if they\'re not present in tree.</description> <requirements> <requirement type="package" version="2020.8">qiime2</requirement> </requirements> <command><![CDATA[ qiime phylogeny filter-table --i-table=$itable --i-tree=$itree --o-filtered-table=ofilteredtable #if str($examples) != 'None': --examples=$examples #end if ; cp ofilteredtable.qza $ofilteredtable ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data" /> <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table. [required]" name="itree" optional="False" type="data" /> <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable" /> </outputs> <help><![CDATA[ Remove features from table if they\'re not present in tree. ############################################################### Remove features from a feature table if their identifiers are not tip identifiers in tree. Parameters ---------- table : FeatureTable[Frequency] Feature table that features should be filtered from. tree : Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table. Returns ------- filtered_table : FeatureTable[Frequency] The resulting feature table. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>