Mercurial > repos > florianbegusch > qiime2_suite

<?xml version="1.0" ?>
<tool id="qiime_composition_add-pseudocount" name="qiime composition add-pseudocount" version="2019.4">
	<description> - Add pseudocount to table</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime composition add-pseudocount

--i-table=$itable
--o-composition-table=ocompositiontable

#if str($ppseudocount):
 --p-pseudocount=$ppseudocount
#end if
;
cp ocompositiontable.qza $ocompositiontable
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to which pseudocounts should be added.                                       [required]" name="itable" optional="False" type="data"/>
		<param label="--p-pseudocount: INTEGER The value to add to all counts in the feature table. [default: 1]" name="ppseudocount" optional="True" type="integer" value="1"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: compositiontable.qza" name="ocompositiontable"/>
	</outputs>
	<help><![CDATA[
Add pseudocount to table
########################

Increment all counts in table by pseudocount.

Parameters
----------
table : FeatureTable[Frequency]
    The feature table to which pseudocounts should be added.
pseudocount : Int, optional
    The value to add to all counts in the feature table.

Returns
-------
composition_table : FeatureTable[Composition]
    The resulting feature table.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>
author	florianbegusch
date	Tue, 13 Aug 2019 07:57:53 -0400
parents	a025a4a89e07
children	f190567fe3f6