view qiime2/qiime_feature-table_presence-absence.xml @ 8:d66c7509e8f9 draft

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<?xml version="1.0" ?>
<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" version="2019.4">
	<description> - Convert to presence/absence</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime feature-table presence-absence

--i-table=$itable

--o-presence-absence-table=opresenceabsencetable
;
cp opresenceabsencetable.qza $opresenceabsencetable
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances.                 [required]" name="itable" optional="False" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: presenceabsencetable.qza" name="opresenceabsencetable"/>
	</outputs>
	<help><![CDATA[
Convert to presence/absence
###########################

Convert frequencies to binary values indicating presence or absence of a
feature in a sample.

Parameters
----------
table : FeatureTable[Frequency | RelativeFrequency]
    The feature table to be converted into presence/absence abundances.

Returns
-------
presence_absence_table : FeatureTable[PresenceAbsence]
    The resulting presence/absence feature table.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>