view qiime2-2020.8/qiime_feature-table_merge-taxa.xml @ 20:d93d8888f0b0 draft

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<?xml version="1.0" ?>
<tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa"
      version="2020.8">
  <description>Combine collections of feature taxonomies</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime feature-table merge-taxa
# if $input_files_idata:
  # def list_dict_to_string(list_dict):
    # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
    # for d in list_dict[1:]:
      # set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
    # end for
    # return $file_list
  # end def
--i-data=$list_dict_to_string($input_files_idata)
# end if

--o-merged-data=omergeddata

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp omergeddata.qza $omergeddata

  ]]></command>
  <inputs>
    <repeat name="input_files_idata" optional="False" title="--i-data">
      <param format="qza,no_unzip.zip" label="--i-data: ARTIFACTS... List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. [required]" name="additional_input" optional="False" type="data" />
    </repeat>
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata" />
    
  </outputs>

  <help><![CDATA[
Combine collections of feature taxonomies
###############################################################

Combines a pair of feature data objects which may or may not contain data
for the same features. If different feature data is present for the same
feature id in the inputs, the data from the first will be propagated to the
result.

Parameters
----------
data : List[FeatureData[Taxonomy]]
    The collection of feature taxonomies to be merged.

Returns
-------
merged_data : FeatureData[Taxonomy]
    The resulting collection of feature taxonomies containing all feature
    taxonomies provided.
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>