view qiime2-2020.8/qiime_sample-classifier_summarize.xml @ 20:d93d8888f0b0 draft

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<?xml version="1.0" ?>
<tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize"
      version="2020.8">
  <description>Summarize parameter and feature extraction information for a trained estimator.</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime sample-classifier summarize

--i-sample-estimator=$isampleestimator

--o-visualization=ovisualization

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp otesttable.qza $otesttable

;
qiime tools export  ovisualization.qzv --output-path out
&& mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'

  ]]></command>
  <inputs>
    <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor.                               [required]" name="isampleestimator" optional="False" type="data" />
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
    
  </outputs>

  <help><![CDATA[
Summarize parameter and feature extraction information for a trained estimator.
###############################################################


Summarize parameter and feature extraction information for a trained
estimator.

Parameters
----------
sample_estimator : SampleEstimator[Classifier | Regressor]
    Sample estimator trained with fit_classifier or fit_regressor.

Returns
-------
visualization : Visualization
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>