changeset 19:6c48f8d82424 draft

Deleted selected files

--- a/qiime2/qiime_alignment_mafft.xml	Thu Sep 03 11:02:29 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,74 +0,0 @@
-<?xml version="1.0" ?>
-<tool id="qiime_alignment_mafft" name="qiime alignment mafft"
-      version="2020.8">
-  <description>De novo multiple sequence alignment with MAFFT</description>
-  <requirements>
-    <requirement type="package" version="2020.8">qiime2</requirement>
-  </requirements>
-  <command><![CDATA[
-qiime alignment mafft
-
---i-sequences=$isequences
-
-#if str($pnthreads) != 'None':
---p-n-threads=$pnthreads
-#end if
-
-#if $pparttree:
- --p-parttree
-#end if
-
---o-alignment=oalignment
-
-#if str($examples) != 'None':
---examples=$examples
-#end if
-
-;
-cp oalignment.qza $oalignment
-
-  ]]></command>
-  <inputs>
-    <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT FeatureData[Sequence] The sequences to be aligned.              [required]" name="isequences" optional="False" type="data" />
-    <param label="--p-n-threads: " name="pnthreads" optional="True" type="select">
-      <option selected="True" value="None">Selection is Optional</option>
-      <option value="Int % Range(1">Int % Range(1</option>
-      <option value="None">None</option>
-    </param>
-    <param label="--p-parttree: --p-parttree: / --p-no-parttree This flag is required if the number of sequences being aligned are larger than 1000000. Disabled by default                             [default: False]" name="pparttree" selected="False" type="boolean" />
-    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
-    
-  </inputs>
-
-  <outputs>
-    <data format="qza" label="${tool.name} on ${on_string}: alignment.qza" name="oalignment" />
-    
-  </outputs>
-
-  <help><![CDATA[
-De novo multiple sequence alignment with MAFFT
-###############################################################
-
-Perform de novo multiple sequence alignment using MAFFT.
-
-Parameters
-----------
-sequences : FeatureData[Sequence]
-    The sequences to be aligned.
-n_threads : Int % Range(1, None) | Str % Choices('auto'), optional
-    The number of threads. (Use `auto` to automatically use all available
-    cores)
-parttree : Bool, optional
-    This flag is required if the number of sequences being aligned are
-    larger than 1000000. Disabled by default
-
-Returns
--------
-alignment : FeatureData[AlignedSequence]
-    The aligned sequences.
-  ]]></help>
-  <macros>
-    <import>qiime_citation.xml</import>
-  </macros>
-  <expand macro="qiime_citation"/>
-</tool>
\ No newline at end of file