Mercurial > repos > florianbegusch > qiime2_wrappers
comparison qiime2/qiime_sample-classifier_classify-samples.xml @ 4:71f124e02000 draft default tip
Fixes
| author | florianbegusch |
|---|---|
| date | Tue, 13 Aug 2019 07:40:25 -0400 |
| parents | 149432539226 |
| children |
comparison
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| 3:eda5df31da55 | 4:71f124e02000 |
|---|---|
| 8 qiime sample-classifier classify-samples | 8 qiime sample-classifier classify-samples |
| 9 | 9 |
| 10 --i-table=$itable | 10 --i-table=$itable |
| 11 --m-metadata-column="$mmetadatacolumn" | 11 --m-metadata-column="$mmetadatacolumn" |
| 12 | 12 |
| 13 #if $ptestsize: | 13 #if str($ptestsize): |
| 14 --p-test-size=$ptestsize | 14 --p-test-size=$ptestsize |
| 15 #end if | 15 #end if |
| 16 | 16 |
| 17 #if $pstep: | 17 #if str($pstep): |
| 18 --p-step=$pstep | 18 --p-step=$pstep |
| 19 #end if | 19 #end if |
| 20 | 20 |
| 21 #if $pcv: | 21 #if str($pcv): |
| 22 --p-cv=$pcv | 22 --p-cv=$pcv |
| 23 #end if | 23 #end if |
| 24 | 24 |
| 25 #if str($prandomstate): | 25 #if str($prandomstate): |
| 26 --p-random-state="$prandomstate" | 26 --p-random-state="$prandomstate" |
| 56 #if str($pmissingsamples) != 'None': | 56 #if str($pmissingsamples) != 'None': |
| 57 --p-missing-samples=$pmissingsamples | 57 --p-missing-samples=$pmissingsamples |
| 58 #end if | 58 #end if |
| 59 | 59 |
| 60 | 60 |
| 61 #if $input_files_mmetadatafile: | 61 #if $metadatafile: |
| 62 #def list_dict_to_string(list_dict): | 62 --m-metadata-file=$metadatafile |
| 63 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') | 63 #end if |
| 64 #for d in list_dict[1:]: | 64 |
| 65 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') | |
| 66 #end for | |
| 67 #return $file_list | |
| 68 #end def | |
| 69 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) | |
| 70 #end if | |
| 71 | 65 |
| 72 | 66 |
| 73 --o-sample-estimator=osampleestimator | 67 --o-sample-estimator=osampleestimator |
| 74 --o-feature-importance=ofeatureimportance | 68 --o-feature-importance=ofeatureimportance |
| 75 --o-predictions=opredictions | 69 --o-predictions=opredictions |
| 143 <option selected="True" value="None">Selection is Optional</option> | 137 <option selected="True" value="None">Selection is Optional</option> |
| 144 <option value="error">error</option> | 138 <option value="error">error</option> |
| 145 <option value="ignore">ignore</option> | 139 <option value="ignore">ignore</option> |
| 146 </param> | 140 </param> |
| 147 | 141 |
| 148 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> | 142 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" /> |
| 149 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> | |
| 150 </repeat> | |
| 151 | 143 |
| 152 </inputs> | 144 </inputs> |
| 153 <outputs> | 145 <outputs> |
| 154 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/> | 146 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/> |
| 155 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> | 147 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> |