Mercurial > repos > florianbegusch > qiime2_wrappers
comparison qiime2/qiime_sample-classifier_classify-samples-ncv.xml @ 4:71f124e02000 draft default tip
Fixes
| author | florianbegusch |
|---|---|
| date | Tue, 13 Aug 2019 07:40:25 -0400 |
| parents | 149432539226 |
| children |
comparison
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| 3:eda5df31da55 | 4:71f124e02000 |
|---|---|
| 8 qiime sample-classifier classify-samples-ncv | 8 qiime sample-classifier classify-samples-ncv |
| 9 | 9 |
| 10 --i-table=$itable | 10 --i-table=$itable |
| 11 --m-metadata-column="$mmetadatacolumn" | 11 --m-metadata-column="$mmetadatacolumn" |
| 12 | 12 |
| 13 #if $input_files_mmetadatafile: | 13 |
| 14 #def list_dict_to_string(list_dict): | 14 |
| 15 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') | 15 #if $metadatafile: |
| 16 #for d in list_dict[1:]: | 16 --m-metadata-file=$metadatafile |
| 17 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') | |
| 18 #end for | |
| 19 #return $file_list | |
| 20 #end def | |
| 21 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) | |
| 22 #end if | 17 #end if |
| 23 | 18 |
| 24 #if $pcv: | 19 |
| 20 #if str($pcv): | |
| 25 --p-cv=$pcv | 21 --p-cv=$pcv |
| 26 #end if | 22 #end if |
| 27 | 23 |
| 28 #if str($prandomstate): | 24 #if str($prandomstate): |
| 29 --p-random-state="$prandomstate" | 25 --p-random-state="$prandomstate" |
| 34 #if str($pnjobs): | 30 #if str($pnjobs): |
| 35 --p-n-jobs="$pnjobs" | 31 --p-n-jobs="$pnjobs" |
| 36 #end if | 32 #end if |
| 37 | 33 |
| 38 | 34 |
| 39 #if $pnestimators: | 35 #if str($pnestimators): |
| 40 --p-n-estimators=$pnestimators | 36 --p-n-estimators=$pnestimators |
| 41 #end if | 37 #end if |
| 42 | 38 |
| 43 #if str($pestimator) != 'None': | 39 #if str($pestimator) != 'None': |
| 44 --p-estimator=$pestimator | 40 --p-estimator=$pestimator |
| 79 <option selected="True" value="None">Selection is Optional</option> | 75 <option selected="True" value="None">Selection is Optional</option> |
| 80 <option value="error">error</option> | 76 <option value="error">error</option> |
| 81 <option value="ignore">ignore</option> | 77 <option value="ignore">ignore</option> |
| 82 </param> | 78 </param> |
| 83 | 79 |
| 84 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> | 80 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" /> |
| 85 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> | 81 |
| 86 </repeat> | |
| 87 </inputs> | 82 </inputs> |
| 88 <outputs> | 83 <outputs> |
| 89 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> | 84 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> |
| 90 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> | 85 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> |
| 91 </outputs> | 86 </outputs> |