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comparison qiime2/qiime_sample-classifier_fit-classifier.xml @ 4:71f124e02000 draft default tip

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents 149432539226
children
comparison
equal deleted inserted replaced
3:eda5df31da55 4:71f124e02000
8 qiime sample-classifier fit-classifier 8 qiime sample-classifier fit-classifier
9 9
10 --i-table=$itable 10 --i-table=$itable
11 --m-metadata-column="$mmetadatacolumn" 11 --m-metadata-column="$mmetadatacolumn"
12 12
13 #if $pstep: 13 #if str($pstep):
14 --p-step=$pstep 14 --p-step=$pstep
15 #end if 15 #end if
16 16
17 #if $pcv: 17 #if str($pcv):
18 --p-cv=$pcv 18 --p-cv=$pcv
19 #end if 19 #end if
20 20
21 #if str($prandomstate): 21 #if str($prandomstate):
22 --p-random-state="$prandomstate" 22 --p-random-state="$prandomstate"
27 #if str($pnjobs): 27 #if str($pnjobs):
28 --p-n-jobs="$pnjobs" 28 --p-n-jobs="$pnjobs"
29 #end if 29 #end if
30 30
31 31
32 #if $pnestimators: 32 #if str($pnestimators):
33 --p-n-estimators=$pnestimators 33 --p-n-estimators=$pnestimators
34 #end if 34 #end if
35 35
36 #if str($pestimator) != 'None': 36 #if str($pestimator) != 'None':
37 --p-estimator=$pestimator 37 --p-estimator=$pestimator
48 #if str($pmissingsamples) != 'None': 48 #if str($pmissingsamples) != 'None':
49 --p-missing-samples=$pmissingsamples 49 --p-missing-samples=$pmissingsamples
50 #end if 50 #end if
51 51
52 52
53 #if $input_files_mmetadatafile: 53
54 #def list_dict_to_string(list_dict): 54 #if $metadatafile:
55 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 55 --m-metadata-file=$metadatafile
56 #for d in list_dict[1:]:
57 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
58 #end for
59 #return $file_list
60 #end def
61 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
62 #end if 56 #end if
57
63 58
64 59
65 --o-sample-estimator=osampleestimator 60 --o-sample-estimator=osampleestimator
66 --o-feature-importance=ofeatureimportance 61 --o-feature-importance=ofeatureimportance
67 ; 62 ;
91 <option selected="True" value="None">Selection is Optional</option> 86 <option selected="True" value="None">Selection is Optional</option>
92 <option value="error">error</option> 87 <option value="error">error</option>
93 <option value="ignore">ignore</option> 88 <option value="ignore">ignore</option>
94 </param> 89 </param>
95 90
96 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 91 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
97 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
98 </repeat>
99 92
100 </inputs> 93 </inputs>
101 <outputs> 94 <outputs>
102 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/> 95 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/>
103 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> 96 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/>