view test-data/references/22-phylo_manova.log @ 2:094a2469204d draft

"planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.2.3.1 commit 90093162b8cfb3e75908323761f4ef246222abea"

## Application
Software :/home/maria/miniconda3/envs/frogs@3.2.3/bin/phyloseq_manova.py (version : 3.2.3)
Command : /home/maria/miniconda3/envs/frogs@3.2.3/bin/phyloseq_manova.py --varExp "EnvType" --rdata res_3.2.3/16-phylo_import.Rdata --distance-matrix res_3.2.3/unifrac.tsv --html res_3.2.3/22-phylo_manova.nb.html --log-file res_3.2.3/22-phylo_manova.log

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# Run 1 code Rmarkdown (Rscript version : [1] "R version 4.0.5 (2021-03-31)"
[1] "Rmarkdown version:  2.8"
[1] "Phyloseq version:  1.34.0")
Command:
	Rscript -e "rmarkdown::render('/home/maria/miniconda3/envs/frogs@3.2.3/bin/phyloseq_manova.Rmd', output_file='/home/maria/workspace/FROGS_dev/test/res_3.2.3/22-phylo_manova.nb.html', params=list(phyloseq='/home/maria/workspace/FROGS_dev/test/res_3.2.3/16-phylo_import.Rdata', varExp='EnvType',distance='/home/maria/workspace/FROGS_dev/test/res_3.2.3/unifrac.tsv', libdir ='/home/maria/miniconda3/envs/frogs@3.2.3/lib/external-lib'), intermediates_dir='/home/maria/workspace/FROGS_dev/test/res_3.2.3')" 2> /home/maria/workspace/FROGS_dev/test/res_3.2.3/1622731233.551139_2625_rmarkdown.stderr

Execution:
	start: 03 Jun 2021 16:40:43
	end:   03 Jun 2021 16:40:56