view test-data/references/24-deseq2_visualisation.log @ 2:094a2469204d draft

"planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.2.3.1 commit 90093162b8cfb3e75908323761f4ef246222abea"

## Application
Software :/home/maria/miniconda3/envs/frogs@3.2.3/bin/deseq2_visualisation.py (version : 3.2.3)
Command : /home/maria/miniconda3/envs/frogs@3.2.3/bin/deseq2_visualisation.py --phyloseqData res_3.2.3/16-phylo_import.Rdata --dds res_3.2.3/23-deseq2_preprocess.Rdata --log-file res_3.2.3/24-deseq2_visualisation.log --html res_3.2.3/24-deseq2_visualisation.nb.html --var EnvType --mod1 BoeufHache --mod2 SaumonFume

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# Run deseq2_visualisation.Rmd (Rscript version : [1] "R version 4.0.5 (2021-03-31)"
[1] "DESeq2 version:  1.30.1")
Command:
	Rscript -e "rmarkdown::render('/home/maria/miniconda3/envs/frogs@3.2.3/bin/deseq2_visualisation.Rmd', output_file='/home/maria/workspace/FROGS_dev/test/res_3.2.3/24-deseq2_visualisation.nb.html', params=list(phyloseq_data='/home/maria/workspace/FROGS_dev/test/res_3.2.3/16-phylo_import.Rdata', dds='/home/maria/workspace/FROGS_dev/test/res_3.2.3/23-deseq2_preprocess.Rdata', var='EnvType', mod1='BoeufHache', mod2='SaumonFume', padj=0.05), intermediates_dir='/home/maria/workspace/FROGS_dev/test/res_3.2.3')" 2> /home/maria/workspace/FROGS_dev/test/res_3.2.3/1622731301.4988678_2720_R.stderr

Execution:
	start: 03 Jun 2021 16:41:53
	end:   03 Jun 2021 16:42:17