library(plotly)
source("https://raw.githubusercontent.com/mahendra-mariadassou/phyloseq-extended/master/load-extra-functions.R")
#if in new session
#data <- path to Rdata file
#load(data)
library(plotly)
source("https://raw.githubusercontent.com/mahendra-mariadassou/phyloseq-extended/master/load-extra-functions.R")
# if in new session
# data <- path to Rdata file
# load(data)
varExp <- #Experiment variable
taxaRank1 <- #Taxonomic rank at which to filter your data
taxaRank2 <- #Taxonomic rank used for aggregation
taxaSet1 <- #Taxa (at previously specified taxonomic rank) to keep in the dataset
taxaRank <- #Taxonomic rank used for coloring (typically "Phylum")
numberOfTaxa <- #Number of most abundant taxa to keep