frogs_3_1_0: test-data/references/09-affiliationsStat.html annotate

annotate test-data/references/09-affiliationsStat.html @ 0:59bc96331073 draft default tip

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647

author	frogs
date	Thu, 28 Feb 2019 10:14:49 -0500
parents
children

rev	line source
0 59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1 <!DOCTYPE html>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	2 <!--
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	3 # Copyright (C) 2015 INRA
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	4 #
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	5 # This program is free software: you can redistribute it and/or modify
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	6 # it under the terms of the GNU General Public License as published by
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	7 # the Free Software Foundation, either version 3 of the License, or
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	8 # (at your option) any later version.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	9 #
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	10 # This program is distributed in the hope that it will be useful,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	11 # but WITHOUT ANY WARRANTY; without even the implied warranty of
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	13 # GNU General Public License for more details.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	14 #
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	15 # You should have received a copy of the GNU General Public License
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	16 # along with this program. If not, see <http://www.gnu.org/licenses/>.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	17 -->
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	18 <html>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	19 <head>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	20 <title>FROGS Affiliations stat</title>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	21 <meta charset="UTF-8">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	22 <meta name="version" content="1.3.0">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	23 <!-- CSS -->
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	24 <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/4.1.1/css/bootstrap.css"></link>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	25 <link rel="stylesheet" href="https://cdn.datatables.net/1.10.19/css/dataTables.bootstrap4.min.css"></link>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	26 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.7.0/css/font-awesome.min.css" rel="stylesheet">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	27 <style type="text/css">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	28 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	29 * jDistrib 0.1.0 - CSS jDistrib Library
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	30 *
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	31 * Copyright (c) 2015 Escudie Frederic
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	32 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	33 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	34 #sunburst-graph{margin-left:auto;margin-right:auto}.jDistrib-walk-rank{height:100%;margin-right:2px;padding:8px;float:left;border-top-right-radius:7px;border-bottom-right-radius:7px;cursor:pointer;box-shadow:1px 1px 1px #555}.jDistrib-walk-rank-size{margin-left:5px;padding:4px;background-color:#FFF;color:#648a89;border-radius:9px;text-align:center;font-size:10px;font-family:sans-serif}.jDistrib-root-label{font-weight:700;cursor:pointer}.jDistrib-arc-label{cursor:pointer}.jDistrib-arc{cursor:pointer;stroke:#fff;fill-rule:evenodd}.jDistrib-tooltip{position:absolute;padding:10px;font:12px sans-serif;background:#8EADAC;border:0;border-radius:8px;pointer-events:none}.jDistrib-empty-details{color:#fff;background-color:#8EADAC;padding:15px;margin-bottom:20px;border:1px solid transparent;border-radius:4px}.jDistrib-table-details>tbody>tr:nth-of-type(2n+1){background-color:#F5F5F5}.jDistrib-table-details{border:1px solid #DDD;border-radius:8px;border-spacing:1px;border-collapse:separate}.jDistrib-table-details td,th{padding:2px 8px}.jDistrib-table-details .number{text-align:right}.jDistrib-export-toggle{height:30px;width:30px;padding:1px}.jDistrib-export-toggle div{background-color:#636363;border-radius:2px;height:3px;margin-top:2px;margin-bottom:2px}
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	35 </style>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	36 <style type="text/css">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	37 #js-alert {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	38 width: 90%;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	39 margin-right: auto;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	40 margin-left: auto;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	41 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	42 #content {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	43 width: 90%;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	44 margin-right: auto;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	45 margin-left: auto;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	46 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	47 ul.nav-tabs {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	48 margin-bottom: 30px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	49 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	50 .clear {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	51 clear: both;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	52 height: 0px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	53 width: 100%;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	54 float: none !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	55 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	56 .set-datatype {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	57 width: 200px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	58 margin-left: auto;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	59 margin-right: auto;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	60 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	61 .table-action {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	62 vertical-align: middle;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	63 margin-right: 20px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	64 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	65 .fusion-left {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	66 position:relative;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	67 z-index:2;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	68 margin-right: 0px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	69 margin-bottom: 0px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	70 border-top-left-radius: 4px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	71 border-bottom-left-radius: 4px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	72 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	73 .fusion-right {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	74 border-top-left-radius: 0px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	75 border-bottom-left-radius: 0px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	76 margin-left:-6px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	77 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	78 select.table-action {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	79 padding: 6px 12px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	80 font-size: 14px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	81 font-weight: 400;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	82 line-height: 1.42857;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	83 box-shadow: 0px 1px 1px rgba(0, 0, 0, 0.075);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	84 color: #555;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	85 background-color: #FFF;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	86 background-image: none;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	87 border: 1px solid #CCC;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	88 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	89 #sunburst-detail table {
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59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	91 margin-right: auto;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	92 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	93 #sunburst-detail p {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	94 text-align: center;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	95 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	96 #sunburst-menu input {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	97 margin-right: 10px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	98 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	99 #display-global-sunburst {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	100 margin-bottom: 40px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	101 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	102 .page-item.active .page-link {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	103 z-index: 1;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	104 color: #fff;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	105 background-color: #8EADAC;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	106 border-color: #8EADAC;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	107 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	108 .btn {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	109 color: #fff;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	110 border:#8EADAC;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	111 background-color: #8EADAC;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	112 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	113 .btn:focus, .btn:active {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	114 outline: none !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	115 box-shadow: none !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	116 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	117 .btn:hover{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	118 color: #fff;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	119 border:#648a89;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	120 background-color: #648a89;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	121 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	122 .pb-2, .py-2 {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	123 padding-bottom: 1.5rem !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	124 margin-bottom: 2rem !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	125 margin-top: 4rem !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	126 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	127 .pb-2-first{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	128 padding-bottom: 1.5rem !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	129 margin-bottom: 2rem !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	130 margin-top: 1rem !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	131 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	132 .nav-tabs .nav-link.active, .nav-tabs .nav-item.show .nav-link{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	133 color: #fff;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	134 background-color: #8EADAF;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	135 border-color: #dee2e6 #dee2e6 #fff;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	136 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	137 a {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	138 color: #8EAEAF;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	139 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	140 a:hover{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	141 color:#648a89;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	142 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	143 .page-link{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	144 color: #8EAEAF;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	145 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	146 .page-link:hover{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	147
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	148 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	149 .page-link:not(:disabled):not(.disabled) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	150 color: #8EAEAF;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	151 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	152 .page-item.active .page-link {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	153 color: #fff;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	154 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	155 /* ##### THEME FOR CHECKBOXES ##### */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	156 .container {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	157 position: relative;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	158 padding-left: 0px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	159 margin-bottom: 15px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	160 cursor: pointer;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	161 -webkit-user-select: none;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	162 -moz-user-select: none;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	163 -ms-user-select: none;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	164 user-select: none;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	165 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	166
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	167 /* Hide the browser's default checkbox */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	168 .container input {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	169 position: absolute;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	170 opacity: 0;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	171 cursor: pointer;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	172 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	173
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	174 /* Create a custom checkbox */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	175 .checkmark {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	176 position: absolute;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	177 top: 0;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	178 left: 0;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	179 height: 20px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	180 width: 20px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	181 background-color: #8EADAC;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	182 border-radius: 5px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	183 opacity:0.65;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	184 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	185
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	186 /* On mouse-over, add a grey background color */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	187 .container:hover input ~ .checkmark {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	188 background-color: #648a89;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	189 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	190
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	191 /* When the checkbox is checked, add a blue background */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	192 .container input:checked ~ .checkmark {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	193 background-color: #8EADAC;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	194 opacity:1;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	195 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	196
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	197 /* Create the checkmark/indicator (hidden when not checked) */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	198 .checkmark:after {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	199 content: "";
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	200 position: absolute;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	201 display: none;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	202 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	203
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	204 /* Show the checkmark when checked */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	205 .container input:checked ~ .checkmark:after {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	206 display: block;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	207 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	208
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	209 /* Style the checkmark/indicator */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	210 .container .checkmark:after {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	211 left: 7px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	212 top: 3px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	213 width: 6px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	214 height: 10px;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	215 border: solid white;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	216 border-width: 0 3px 3px 0;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	217 -webkit-transform: rotate(45deg);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	218 -ms-transform: rotate(45deg);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	219 transform: rotate(45deg);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	220 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	221 /* ##### END THEME CHECKBOXES ##### */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	222 .highcharts-button > path{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	223 stroke:#fff !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	224 fill:#8EADAC !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	225 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	226 g.highcharts-button{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	227 cursor:pointer !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	228 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	229 g.highcharts-button:hover{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	230 color: #fff;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	231 border:#648a89;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	232 background-color: #648a89;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	233 background-color: #648a89;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	234 cursor:pointer !important;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	235 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	236 </style>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	237 <!-- JS -->
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	238 <script type="text/javascript" src="https://code.jquery.com/jquery-2.1.3.min.js"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	239 <script type="text/javascript" src="https://code.highcharts.com/4.1.4/highcharts.js"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	240 <script type="text/javascript" src="https://code.highcharts.com/4.1.4/highcharts-more.js"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	241 <script type="text/javascript" src="https://code.highcharts.com/4.1.4/modules/heatmap.js"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	242 <script type="text/javascript" src="https://code.highcharts.com/4.1.4/modules/exporting.js"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	243 <script type="text/javascript" src="https://cdn.datatables.net/1.10.19/js/jquery.dataTables.min.js"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	244 <script type="text/javascript" src="https://cdn.datatables.net/1.10.19/js/dataTables.bootstrap4.min.js"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	245 <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.1/js/bootstrap.min.js" integrity="sha384-smHYKdLADwkXOn1EmN1qk/HfnUcbVRZyYmZ4qpPea6sjB/pTJ0euyQp0Mk8ck+5T" crossorigin="anonymous"></script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	246
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	247 <script type="text/javascript">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	248 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	249 * d3 v3 - JavaScript d3 Library
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	250 * (http://d3js.org/)
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	251 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	252 !function(){function n(n){return n&&(n.ownerDocument\|\|n.document\|\|n).documentElement}function t(n){return n&&(n.ownerDocument&&n.ownerDocument.defaultView\|\|n.document&&n\|\|n.defaultView)}function e(n,t){return t>n?-1:n>t?1:n>=t?0:0/0}function r(n){return null===n?0/0:+n}function u(n){return!isNaN(n)}function i(n){return{left:function(t,e,r,u){for(arguments.length<3&&(r=0),arguments.length<4&&(u=t.length);u>r;){var i=r+u>>>1;n(t[i],e)<0?r=i+1:u=i}return r},right:function(t,e,r,u){for(arguments.length<3&&(r=0),arguments.length<4&&(u=t.length);u>r;){var i=r+u>>>1;n(t[i],e)>0?u=i:r=i+1}return r}}}function o(n){return n.length}function a(n){for(var t=1;nt%1;)t=10;return t}function c(n,t){for(var e in t)Object.defineProperty(n.prototype,e,{value:t[e],enumerable:!1})}function 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n.getUTCSeconds()}],["%I:%M",function(n){return n.getUTCMinutes()}],["%I %p",function(n){return n.getUTCHours()}],["%a %d",function(n){return n.getUTCDay()&&1!=n.getUTCDate()}],["%b %d",function(n){return 1!=n.getUTCDate()}],["%B",function(n){return n.getUTCMonth()}],["%Y",Ne]]);Wl.year=ac.year.utc,ac.scale.utc=function(){return Go(ta.scale.linear(),Wl,Jl)},ta.text=At(function(n){return n.responseText}),ta.json=function(n,t){return Nt(n,"application/json",Qo,t)},ta.html=function(n,t){return Nt(n,"text/html",na,t)},ta.xml=At(function(n){return n.responseXML}),"function"==typeof define&&define.amd?define(ta):"object"==typeof module&&module.exports&&(module.exports=ta),this.d3=ta}();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	257 </script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	258 <script type="text/javascript">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	259 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	260 * jDistrib alpha version - JavaScript jDistrib Library
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	261 *
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	262 * Copyright (c) 2015 Escudie Frederic
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	263 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	264 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	265 var jDistrib={pg_selector:{sunburst:null,walktrace:null,menu:null,detail:null},access:{graph:null,tooltip:null},graph:{sunburst:{padding:30,width:null,height:null,_radius:null,_arc:null,_x:null,_y:null},labels:{padding:7,font_size:15},colors:{set:["#7cb5ec","#434348","#90ed7d","#f7a35c","#8085e9","#f15c80","#e4d354","#2b908f","#f45b5b","#91e8e1"],neutral:"#dadaeb",radialization:15,start_depth:1}},tree:{current_root:null,root_size:0}},cJDistrib=function(t,e){Object.deepExtend(jDistrib,e),null==jDistrib.pg_selector.menu\|\|d3.select(jDistrib.pg_selector.menu).empty()\|\|_setMenu(),null==jDistrib.pg_selector.detail\|\|d3.select(jDistrib.pg_selector.detail).empty()\|\|(jQuery(jDistrib.pg_selector.sunburst).on("jd.walk",function(){clearDetails()}),jQuery(jDistrib.pg_selector.sunburst).on("jd.displayDetails",function(t,e){displayDetails(e)})),null==jDistrib.pg_selector.walktrace\|\|d3.select(jDistrib.pg_selector.walktrace).empty()\|\|jQuery(jDistrib.pg_selector.sunburst).on("jd.walk",function(t,e){walkTraceUpdate(e)}),_setSVG(),_load(t),walkTo(jDistrib.tree.current_root,0)},_setSVG=function(){var t=d3.select(jDistrib.pg_selector.sunburst).append("svg").attr("width",jDistrib.graph.sunburst.width).attr("height",jDistrib.graph.sunburst.height).append("g").attr("transform","translate("+jDistrib.graph.sunburst.width/2+","+jDistrib.graph.sunburst.height/2+")");jDistrib.access.graph=t,jDistrib.graph._radius=Math.min(jDistrib.graph.sunburst.width,jDistrib.graph.sunburst.height)/2-jDistrib.graph.sunburst.padding,(jDistrib.graph.sunburst.padding>=jDistrib.graph.sunburst.width+10\|\|jDistrib.graph.sunburst.padding>=jDistrib.graph.sunburst.height+10)&&(jDistrib.graph._radius=Math.min(jDistrib.graph.sunburst.width,jDistrib.graph.sunburst.height)/2),jDistrib.graph._x=d3.scale.linear().range([0,2Math.PI]),jDistrib.graph._y=d3.scale.pow().exponent(1.3).domain([0,1]).range([0,jDistrib.graph._radius]),jDistrib.graph._arc=d3.svg.arc().startAngle(function(t){return getStartAngle(t)}).endAngle(function(t){return getEndAngle(t)}).innerRadius(function(t){return getInnerRadius(t)}).outerRadius(function(t){return getOuterRadius(t)}),jDistrib.access.tooltip=d3.select(jDistrib.pg_selector.sunburst).append("div").attr("class","jDistrib-tooltip").style("opacity",0)},_load=function(t){jDistrib.tree.current_root=t,jDistrib.tree.root_size=getSize(t);var e=d3.layout.partition().value(function(t){return t.size});addID(t,0),addDepth(t,0);d3.select(jDistrib.pg_selector.sunburst+" g").datum(t).selectAll("path").data(e.nodes).enter().append("path").attr("d",jDistrib.graph._arc).attr("class","jDistrib-arc").attr("id",function(t){return"sb-arc-"+t.sunburst_id}).on("click",click).on("dblclick",dblclick).on("mousemove",hover).on("mouseout",function(){hideTooltip()}).each(stash),getColorsByFirstNodes(t);changeColorDepth(jDistrib.graph.colors.start_depth)},hover=function(t){displayTooltip(t)},click=function(t){jQuery(jDistrib.pg_selector.sunburst).trigger("jd.displayDetails",[t])},dblclick=function(t){walkTo(t)};Object.deepExtend=function(t,e){for(var r in e)"object"==typeof e[r]&&null!==e[r]?(t[r]=t[r]\|\|{},arguments.callee(t[r],e[r])):t[r]=e[r];return t};var getStartAngle=function(t){return Math.max(0,Math.min(2Math.PI,jDistrib.graph._x(t.x)))},getEndAngle=function(t){return Math.max(0,Math.min(2Math.PI,jDistrib.graph._x(t.x+t.dx)))},getInnerRadius=function(t){return Math.max(0,t.y?jDistrib.graph._y(t.y):t.y)},getOuterRadius=function(t){return Math.max(0,jDistrib.graph._y(t.y+t.dy))},stash=function(t){t.x0=t.x,t.dx0=t.dx},brancheSizes=function(t){var e=new Array,r=t;for(e.unshift({name:r.name,size:getSize(r),node:r});r.hasOwnProperty("parent")&&null!=r.parent;)r=r.parent,e.unshift({name:r.name,size:getSize(r),node:r});return e},sunburstUpdate=function(t,e){e=null==e?1e3:e,removeLabels(),d3.selectAll(jDistrib.pg_selector.sunburst+" path").transition().duration(e).attrTween("d",arcTweenZoom(t)),setTimeout(function(){addLabels()},e)},walkTo=function(t,e){jQuery(jDistrib.pg_selector.sunburst).trigger("jd.walk",[t]),jDistrib.tree.current_root=t,sunburstUpdate(t,e)},arcTweenData=function(t,e){function r(e){var r=i(e);return t.x0=r.x,t.dx0=r.dx,jDistrib.graph._arc(r)}var i=d3.interpolate({x:t.x0,dx:t.dx0},t);if(0==e){var n=d3.interpolate(x.domain(),[jDistrib.tree.current_root.x,jDistrib.tree.current_root.x+jDistrib.tree.current_root.dx]);return function(t){return x.domain(n(t)),r(t)}}return r},arcTweenZoom=function(t){var e=d3.interpolate(jDistrib.graph._x.domain(),[t.x,t.x+t.dx]),r=d3.interpolate(jDistrib.graph._y.domain(),[t.y,1]),i=d3.interpolate(jDistrib.graph._y.range(),[t.y?20:0,jDistrib.graph._radius]);return function(t,n){return n?function(){return jDistrib.graph._arc(t)}:function(n){return jDistrib.graph._x.domain(e(n)),jDistrib.graph._y.domain(r(n)).range(i(n)),jDistrib.graph._arc(t)}}},colorComponentToHexa=function(t){var e=t.toString(16);return e.length<2&&(e="0"+e),e},RGBToHexa=function(t,e,r){return colorComponentToHexa(t)+colorComponentToHexa(e)+colorComponentToHexa(r)},hexa2RGB=function(t){return[parseInt(t.substring(0,2),16),parseInt(t.substring(2,4),16),parseInt(t.substring(4,6),16)]},colorToWhite=function(t,e){var r=new Array;if(0===t.indexOf("#"))r=hexa2RGB(t.substr(1));else if(0===t.indexOf("rgb(")){r=t.substr(4,t.length-1).split(",");for(var i=0;3>i;i++)r[i]=parseInt(r[i])}for(var n="#",i=0;3>i;i++)n+=colorComponentToHexa(Math.min(255,r[i]+e));return n},getNodeByDepthSorted=function(t,e){var r=new Array;if(t.depth==e)r.push(t);else if(t.depth<e&&t.hasOwnProperty("children")&&0!=t.children.length)for(var i=t.children.sort(function(t,e){return getSize(e)-getSize(t)}),n=0;n<i.length;n++)for(var s=getNodeByDepth(i[n],e),a=0;a<s.length;a++)r.push(s[a]);return r},getColorsByFirstNodes=function(t){for(var e=getNodeByDepthSorted(t,t.depth+jDistrib.graph.colors.start_depth),r=new Array,i=0;i<e.length;i++)r["sb-arc-"+e[i].sunburst_id]=jDistrib.graph.colors.set[i%jDistrib.graph.colors.set.length];return r},getColorToApply=function(t,e){return t.depth<jDistrib.graph.colors.start_depth?jDistrib.graph.colors.neutral:t.depth==jDistrib.graph.colors.start_depth?e["sb-arc-"+t.sunburst_id]:colorToWhite(d3.select("#sb-arc-"+t.parent.sunburst_id).style("fill"),jDistrib.graph.colors.radialization)},getNodeByDepth=function(t,e){var r=new Array;if(t.depth==e)r.push(t);else if(t.depth<e&&t.hasOwnProperty("children")&&0!=t.children.length)for(var i=0;i<t.children.length;i++)for(var n=getNodeByDepth(t.children[i],e),s=0;s<n.length;s++)r.push(n[s]);return r},addDepth=function(t,e){if(t.depth=e,t.hasOwnProperty("children")&&0!=t.children.length)for(var r=0;r<t.children.length;r++)addDepth(t.children[r],e+1)},addID=function(t,e){if(e+=1,t.sunburst_id=e,t.hasOwnProperty("children")&&0!=t.children.length)for(var r=0;r<t.children.length;r++)e=addID(t.children[r],e);return e},getSize=function(t){if(t.hasOwnProperty("size"))return t.size;if(t.hasOwnProperty("children")&&0!=t.children.length){for(var e=0,r=0;r<t.children.length;r++)e+=getSize(t.children[r]);return e}},getRoot=function(t){for(var e=t;e.hasOwnProperty("parent")&&null!=e.parent;)e=e.parent;return e},addLabels=function(){0!=jDistrib.tree.current_root.depth&&d3.select(jDistrib.pg_selector.sunburst+" g").append("text").text(jDistrib.tree.current_root.depth).attr("class","jDistrib-root-label").attr("text-anchor","middle").attr("x",0).attr("y",0).on("dblclick",function(){walkTo(jDistrib.tree.current_root.parent)}),d3.selectAll(jDistrib.pg_selector.sunburst+" path").each(function(t){if(t==jDistrib.tree.current_root\|\|isChildOf(t,jDistrib.tree.current_root)){var e=getEndAngle(t)-getStartAngle(t),r=getInnerRadius(t),i=Math.sin(e/2)r2,n=getOuterRadius(t)-r,s=r+(getOuterRadius(t)-r)/2,a=se;a>=n?setLabelArcMode(t,a,n):setLabelLineMode(t,n,i,r,e)}})},setLabelArcMode=function(t,e,r){if(r>=jDistrib.graph.labels.font_size){var i=d3.select(jDistrib.pg_selector.sunburst+" g"),n=t.name;"root"==t.name&&(n=""),i.append("text").text(n).attr("id","evaluate-size").attr("white-space","nowrap").attr("visibility","hidden").style("font-size",jDistrib.graph.labels.font_size+"px");var s=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;if(jDistrib.graph.labels.padding>e-3)n="";else for(;s>e-3;)n=n.substring(0,n.length-1),d3.select("#evaluate-size").text(n),s=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;d3.select("#evaluate-size").remove(),0!=n.length&&n.length<t.name.length&&(n=n.length>1?n.substring(0,n.length-1)+".":""),n.length>0&&i.append("text").attr("class","jDistrib-arc-label").attr("dy",(getOuterRadius(t)-getInnerRadius(t))/2).style("font-size",jDistrib.graph.labels.font_size+"px").attr("text-rendering","optimizeLegibility").append("textPath").attr("xlink:href",function(){return"#sb-arc-"+t.sunburst_id}).attr("startOffset",jDistrib.graph.labels.padding).text(function(){return n}).on("click",function(){click(t)}).on("dblclick",function(){walkTo(t)}).on("mousemove",function(){displayTooltip(t)}).on("mouseout",function(){hideTooltip()})}},setLabelLineMode=function(t,e,r,i,n){var s=d3.select(jDistrib.pg_selector.sunburst+" g"),a=!1;if(n>=Math.PI&&2i>jDistrib.graph.labels.font_size?a=!0:r>jDistrib.graph.labels.font_size&&(a=!0),a){var l=t.name;if("root"==t.name&&(l=""),t.hasOwnProperty("children")&&0!=t.children.length){s.append("text").text(l).attr("id","evaluate-size").attr("white-space","nowrap").attr("visibility","hidden").style("font-size",jDistrib.graph.labels.font_size+"px");var o=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;if(jDistrib.graph.labels.padding>e-3)l="";else for(;o>e-3;)l=l.substring(0,l.length-1),d3.select("#evaluate-size").text(l),o=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;d3.select("#evaluate-size").remove(),0!=l.length&&l.length<t.name.length&&(l=l.length>1?l.substring(0,l.length-1)+".":"")}l.length>0&&s.append("text").text(function(){return l}).attr("class","jDistrib-arc-label").style("font-size",jDistrib.graph.labels.font_size+"px").attr("dy",".35em").attr("text-anchor",function(){return jDistrib.graph._x(t.x+t.dx/2)>Math.PI?"end":"start"}).attr("transform",function(){var e=180jDistrib.graph._x(t.x+t.dx/2)/Math.PI-90;return"rotate("+e+")translate("+(jDistrib.graph._y(t.y)+jDistrib.graph.labels.padding)+")rotate("+(e>90?-180:0)+")"}).on("click",function(){click(t)}).on("dblclick",function(){walkTo(t)}).on("mousemove",function(){displayTooltip(t)}).on("mouseout",function(){hideTooltip()})}},removeLabels=function(){d3.selectAll(jDistrib.pg_selector.sunburst+" .jDistrib-arc-label").remove(),d3.selectAll(jDistrib.pg_selector.sunburst+" .jDistrib-root-label").remove()},isChildOf=function(t,e){return t.depth<=e.depth?!1:t.depth-1==e.depth?t.parent==e:isChildOf(t.parent,e)},hideTooltip=function(){jDistrib.access.tooltip.transition().duration(500).style("opacity",0)},displayTooltip=function(t){jDistrib.access.tooltip.html(getTooltipContent(t)).style("left",d3.event.layerX+5+"px").style("top",d3.event.layerY-30+"px"),jDistrib.access.tooltip.transition().duration(200).style("opacity",.9)},getTooltipContent=function(t){return 0==jDistrib.tree.current_root.depth?t.name+": <b>"+(getSize(t)/jDistrib.tree.root_size100).toFixed(3)+"%</b>":t.name+":<br />Total <b>"+(getSize(t)/jDistrib.tree.root_size100).toFixed(3)+"%</b><br />"+jDistrib.tree.current_root.name+" <b>"+(getSize(t)/getSize(jDistrib.tree.current_root)100).toFixed(3)+"%</b>"},walkTraceUpdate=function(t){var e=brancheSizes(t),r=d3.select(jDistrib.pg_selector.walktrace);r.selectAll(".jDistrib-walk-path").remove();for(var i=r.append("div").attr("class","jDistrib-walk-path"),n=0;n<e.length;n++){var s=i.append("div").attr("class","jDistrib-walk-rank").attr("style","background-color:#8EADAC;color:#fff");s.append("span").attr("class","jDistrib-walk-rank-name").html(e[n].name),0!=n&&s.append("span").attr("class","jDistrib-walk-rank-size").html((parseInt(e[n].size)/parseInt(e[n-1].size)100).toFixed(1)),s.data([e[n].node]),s.on("click",function(){walkTo(d3.select(this)[0][0].__data__)})}i.append("div").attr("style","clear:both")},_setMenu=function(){d3.select(jDistrib.pg_selector.menu).append("label").attr("for","in-label-size").text("Font size: "),d3.select(jDistrib.pg_selector.menu).append("input").attr("id","in-label-size").attr("type","number").attr("min",1).attr("value",jDistrib.graph.labels.font_size).on("change",function(){d3.select("#in-color-depth")[0][0].value<1&&(d3.select("#in-color-depth")[0][0].value=1),changeLabelSize(d3.select("#in-label-size")[0][0].value)});var t=7;d3.select(jDistrib.pg_selector.menu).append("label").attr("for","in-color-depth").text("Colors start depth: "),d3.select(jDistrib.pg_selector.menu).append("input").attr("id","in-color-depth").attr("type","number").attr("min",1).attr("max",t).attr("value",jDistrib.graph.colors.start_depth).on("change",function(){d3.select("#in-color-depth")[0][0].value<1?d3.select("#in-color-depth")[0][0].value=1:d3.select("#in-color-depth")[0][0].value>t&&(d3.select("#in-color-depth")[0][0].value=t),changeColorDepth(d3.select("#in-color-depth")[0][0].value)})},changeLabelSize=function(t){jDistrib.graph.labels.font_size=t,removeLabels(),addLabels()},changeColorDepth=function(t){jDistrib.graph.colors.start_depth=t;var e=getColorsByFirstNodes(getRoot(jDistrib.tree.current_root));d3.select(jDistrib.pg_selector.sunburst+" g").selectAll("path").style("fill",function(t){return getColorToApply(t,e)})},clearDetails=function(){d3.select(jDistrib.pg_selector.detail).html(""),d3.select(jDistrib.pg_selector.detail).append("div").attr("class","jDistrib-empty-details").text("Click on an element to see more details.")},displayDetails=function(t){for(var e=brancheSizes(t),r="",i=0;i<e.length;i++){var n="";n+="<td>"+e[i].name+"</td>",n+='<td class="number">'+e[i].size+"</td>",0!=i?(n+='<td class="number">'+(parseInt(e[i].size)/parseInt(e[0].size)100).toFixed(3)+"</td>",n+='<td class="number">'+(parseInt(e[i].size)/parseInt(e[i-1].size)100).toFixed(3)+"</td>"):(n+="<td></td>",n+="<td></td>"),r+="<tr>"+n+"</tr>"}d3.select(jDistrib.pg_selector.detail).html('<table class="jDistrib-table-details"> <thead> <tr> <th>Name</th> <th>Size</th> <th>Global %</th> <th>Parent %</th> </tr> </thead> <tbody>'+r+"</tbody></table><p>"+t.name+" nb children: "+(void 0==t.children?0:t.children.length)+"</p>")},exportSVG=function(){console.log("export"),d3.select(jDistrib.pg_selector.sunburst+" .jDistrib-data-export").empty()&&d3.select(jDistrib.pg_selector.sunburst).append("a").attr("class","jDistrib-data-export").attr("href","").attr("download","").attr("style","display:none;");var t=d3.select(jDistrib.pg_selector.sunburst+" svg");console.log(t[0][0]),xml=(new XMLSerializer).serializeToString(t[0][0]),svg_data="data:application/octet-stream;base64,"+btoa(xml),d3.select(jDistrib.pg_selector.sunburst+" .jDistrib-data-export").attr("href",svg_data).attr("download","jDistribChart.svg"),jQuery(jDistrib.pg_selector.sunburst+" .jDistrib-data-export")[0].click()};
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	266 </script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	267 <script type="text/javascript">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	268 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	269 * ExtendedNode 1.0.0 - JavaScript ExtendedNode Library
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	270 *
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	271 * Copyright (c) 2015 INRA
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	272 *
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	273 * @author: Escudié Frédéric
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	274 * @license: MIT (http://www.opensource.org/licenses/mit-license.php) license.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	275 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	276 var ExtendedNode=function(e,t,n,r){if(this.name=e,this.parent=t,this.children=new Array,null!=n)for(var a=0;a<n.length;a++)this.addChild(n[a]);this.metadata=new Array,null!=r&&(this.metadata=r)};ExtendedNode.prototype.hasChild=function(e){if(null==e)return this.children.length>0;for(var t=!1,n=0;n<this.children.length&&!t;n++)e==this.children[n]&&(t=!0);return t},ExtendedNode.prototype.getChild=function(e){if(!this.hasChild(e))throw this.name+" doesn't have child named '"+e+"'.";return this.children[e]},ExtendedNode.prototype.getParent=function(){return this.parent},ExtendedNode.prototype.getNodeByDepth=function(e){var t=new Array;if(0==e)t.push(this);else if(this.hasChild())for(var n=0;n<this.children.length;n++)for(var r=this.children[n].getNodeByDepth(e-1),a=0;a<r.length;a++)t.push(r[a]);return t},ExtendedNode.prototype.addChild=function(e){null==e.parent&&(e.parent=this),this.children.push(e)},ExtendedNode.fromNewick=function(e){for(var t=new Array,n=0;n<e.length;n++){var r=e[n];if("("==r)t.push("(");else if(")"==r){for(var a=new ExtendedNode(null,null,null,null);"("!=t[t.length-1];)a.addChild(t.pop());t.pop(),t.push(a)}else if(","==r);else if(";"==r);else if(" "==r);else if(":"==r)if("{"==e[n+1]){for(metadata_json="{",n++,nb_open=1,nb_closed=0;nb_open!=nb_closed;)n++,metadata_json+=e[n],"{"==e[n]?nb_open++:"}"==e[n]&&nb_closed++;t[t.length-1].metadata=JSON.parse(metadata_json)}else{for(var h="";","!=e[n+1]&&")"!=e[n+1]&&";"!=e[n+1];)n++,h+=e[n];t[t.length-1].metadata.dist=h}else{var i=null;0!=n&&(i=e[n-1]),'"'==r?(stop_markers=['"'],n++):stop_markers=[",",")",":",";"];for(var d=e[n];-1==stop_markers.indexOf(e[n+1]);)n++,d+=e[n];if(-1!=stop_markers.indexOf('"')&&n++,")"==i)t[t.length-1].name=d;else{var l=new ExtendedNode(d,null,null,null);t.push(l)}}}return t[0]},ExtendedNode.prototype.keepOnlySamples=function(e){var t=!1;if(this.hasChild()){for(var n=new Array,r=0;r<this.children.length;r++)this.children[r].keepOnlySamples(e)&&n.push(r);for(var a=0,h=0;h<n.length;h++)this.children.splice(n[h]-a,1),a++;0==this.children.length&&(t=!0)}else{for(var i=!1,d={},l=0;l<e.length;l++)this.metadata.hasOwnProperty(e[l])&&(d[e[l]]=this.metadata[e[l]],i=!0);i?this.metadata=d:t=!0}return t},ExtendedNode.prototype.toJson=function(){var e={name:null!=this.name?this.name:"",metadata:this.metadata};if(this.hasChild()){for(var t=new Array,n=0;n<this.children.length;n++)t.push(this.children[n].toJson());e.children=t}var r=Object.keys(this.metadata);if(0!=r.length){for(var a=0,h=0;h<r.length;h++)a+=this.metadata[r[h]];e.size=a}return e};
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	277 </script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	278 <script type="text/javascript">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	279 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	280 * HTMLTable.js 0.1.0 - HTMLTable Library
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	281 *
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	282 * Copyright (c) 2015 Escudie Frederic
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	283 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	284 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	285 function HTMLtable(e){var t,r,n=e,a=";";this.deleteColumns=function(e){for(var a=n.getElementsByTagName("tr"),o=0;o<a.length;o++){s=0;var i=a[o].getElementsByTagName("td");0==i.length&&(i=a[o].getElementsByTagName("th"));for(var v=0,s=0;s<t[1];s++)if(!r[o][s]){var f=i[v].getAttribute("colspan");if(null!=f)for(var m=0;f>m;m++){if(in_array(s+m,e)){var u=i[v].getAttribute("colspan");u-1==0?i[v].removeAttribute("colspan"):i[v].setAttribute("colspan",u-1)}if(null==i[v].getAttribute("colspan")){var h=i[v];a[o].removeChild(h),v--}}else if(in_array(s,e)){var h=i[v];a[o].removeChild(h),v--}v++}}l(),g()},this.filter=function(e,a){var l=new RegExp(e),g=new Array;null!=a&&a\|\|(g.c0=!0);for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)r[i][f]\|\|(l.test(v[s].innerHTML)&&(g["c"+f]=!0),s++)}for(var m=new Array,u=0;u<t[1];u++)void 0===g["c"+u]&&m.push(u);this.deleteColumns(m)},this.getModel=function(){return n};var l=function(){for(var e=0,r=0,a=n.getElementsByTagName("tr"),l=0;l<a.length;l++){var g=0;e++;var o=a[l].getElementsByTagName("td");0==o.length&&(o=a[l].getElementsByTagName("th"));for(var i=0;i<o.length;i++){var v=o[i].getAttribute("colspan");g+=null==v?1:parseInt(v)}g>r&&(r=g)}t=new Array(2),t[0]=e,t[1]=r},g=function(){r=new Array(t[0]);for(var e=0;e<t[0];e++){r[e]=new Array(t[1]);for(var a=0;a<t[1];a++)r[e][a]=!1}for(var l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){v=0;var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)if(!r[g][v]){var s=0,f=0,m=o[i].getAttribute("rowspan");null!=m&&(s=parseInt(m)-1);var u=o[i].getAttribute("colspan");null!=u&&(f=parseInt(u)-1);for(var h=s;h>=0;h--)for(var y=f;y>=0;y--)(0!=h\|\|0!=y)&&(r[g+h][v+y]=!0);i++}}};this.replace=function(e,a,l){var g=new RegExp(e);null==a&&(a=""),null==l&&(l="");for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)if(!r[i][f]){var m=g.exec(v[s].innerHTML);null!=m&&(void 0===m[1]&&(m[1]=""),v[s].innerHTML=a+m[1]+l),s++}}},this.toCSV=function(){for(var e="",l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)r[g][v]\|\|(e+=o[i].innerHTML,i++),e+=a;e=e.substr(0,e.length-1)+"\n"}return e},l(),g()}var in_array=function(e,t){for(var r in t)if(t[r]==e)return!0;return!1};
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	286
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	287 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	288 * dataTableExtractor.plugin.js 0.1.0 - datatableExport Library
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	289 *
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	290 * Copyright (c) 2015 Escudie Frederic
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	291 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	292 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	293 !function(t){t.fn.datatableExport=function(a){var e={anchor_id:t(this).attr("id"),table_id:null,csv_separator:";",omitted_columns:[]},n=t.extend(e,a);if(!t(this).length)throw"The element where the datatableExport is called does not exist.";if(void 0==n.anchor_id)throw"The datatableExport plugin must be called on an element with id.";if(null==n.table_id)throw"You must set the table_id parameter in datatableExport plugin.";if(!t("#"+n.table_id))throw"The datatable '#"+n.table_id+"' cannot be retieve in DOM.";return this.each(function(){var a=t(this);a.on("click",function(){t.fn.datatableExport.csv(n.anchor_id,n.table_id,n.csv_separator,n.omitted_columns)})})},t.fn.datatableExport.cleanCellMarkup=function(a,e){t.parseHTML(e);t("#"+a).append('<div class="hidden data-tmp">'+e+"</div>"),t("#"+a+" .data-tmp").find("input").each(function(){var a="";a=t(this).is(":checkbox")?t(this).is(":checked")?"true":"false":t(this).val(),t(this).replaceWith(a)});var n=t("#"+a+" .data-tmp").text();return t("#"+a+" .data-tmp").remove(),n},t.fn.datatableExport.csv=function(a,e,n,i){var l="",r=t("#"+e).DataTable(),d=t("#"+e+" thead")[0],o=new HTMLtable(d.cloneNode(!0));o.deleteColumns(i),l+=o.toCSV();var c=r.rows().data();t.each(c,function(e,n){for(var r="",d=0;d<n.length;d++)-1==t.inArray(d,i)&&(r+='"'+t.fn.datatableExport.cleanCellMarkup(a,n[d])+'";');""!=r&&(r=r.slice(0,-1)),l+=r+"\n"}),t("#"+a+"-extract-csv").length\|\|t("#"+a).append('<a id="'+a+'-extract-csv" href="data:text/csv;charset=UTF-8,'+encodeURI(l)+'" download="data.csv" style="display:none;"></a>'),t("#"+a+"-extract-csv")[0].click()}}(jQuery);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	294 </script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	295
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	296 <script type="text/javascript">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	297 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	298 * Returns the string representation of the number.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	299 * @param pValue {Float} The number to process.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	300 * @return {String} The string representation (example: 12856892.11111 => 12,856,892.11).
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	301 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	302 var numberDisplay = function( pValue ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	303 var new_val = "" ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	304 if( ("" + pValue + "").indexOf(".") != -1 ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	305 new_val = pValue.toFixed(2).replace(/(\d)(?=(\d{3})+\b)/g, '$1,');
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	306 } else {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	307 new_val = pValue.toFixed().replace(/(\d)(?=(\d{3})+\b)/g, '$1,');
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	308 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	309 return new_val ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	310 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	311 // Radializes colors
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	312 Highcharts.setOptions({
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	313 colors : ['#8EADAC', '#DE9F73', '#428bca', '#993399'],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	314 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	315 Highcharts.SVGRenderer.prototype.symbols.download = function (x, y, w, h) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	316 var path = [
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	317 // Arrow stem
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	318 'M', x + w * 0.5, y,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	319 'L', x + w * 0.5, y + h * 0.7,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	320 // Arrow head
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	321 'M', x + w * 0.3, y + h * 0.5,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	322 'L', x + w * 0.5, y + h * 0.7,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	323 'L', x + w * 0.7, y + h * 0.5,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	324 // Box
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	325 'M', x, y + h * 0.9,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	326 'L', x, y + h,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	327 'L', x + w, y + h,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	328 'L', x + w, y + h * 0.9
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	329 ];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	330 return path;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	331 };
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	332 /* Radial gradient ?*/
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	333 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	334 Highcharts.getOptions().colors = Highcharts.map(Highcharts.getOptions().colors, function (color) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	335 return {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	336 radialGradient: { cx: 0.5, cy: 0.3, r: 0.7 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	337 stops: [
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	338 [0, color],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	339 [1, Highcharts.Color(color).brighten(-0.1).get('rgb')] // darken
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	340 ]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	341 };
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	342 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	343 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	344 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	345 * Returns hash use to init HightChart object (without 'type').
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	346 * @param pTitle {String} The title of the chart.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	347 * @param pXTitle {String} The xAxis title.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	348 * @param pYTitle {String} The yAxis title.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	349 * @param pXCategories {Array} The title of each category (x scale labels).
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	350 * @param pData {Array} The HightChart series.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	351 * @return {Hash} The hash.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	352 * @warning This method use HightChart xAxis.categories.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	353 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	354 var chartplot = function( pTitle, pXTitle, pYTitle, pXCategories, pData ) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	355 var chart = {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	356 title: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	357 text: pTitle
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	358 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	359 xAxis: {},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	360 yAxis: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	361 title: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	362 text: pYTitle
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	363 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	364 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	365 exporting:{buttons: {contextButton: { symbol: 'download' }}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	366 buttons: {contextButton: {menuItems: ['downloadPNG', 'downloadSVG']}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	367 navigation: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	368 buttonOptions: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	369 theme: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	370 r: 4,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	371 fill:'#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	372 states: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	373 hover: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	374 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	375 stroke:'#8EADAC'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	376 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	377 select: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	378 stroke: '#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	379 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	380 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	381 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	382 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	383 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	384 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	385 series: pData,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	386 credits: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	387 enabled: false
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	388 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	389 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	390 if( pXCategories != null ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	391 chart['xAxis']['categories'] = pXCategories ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	392 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	393 if( pXTitle != null ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	394 chart['xAxis']['title'] = { text: pXTitle } ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	395 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	396 if( pData.length <= 1 ) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	397 chart['legend'] = {'enabled': false};
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	398 } else {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	399 chart['legend'] = {'enabled': true};
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	400 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	401
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	402 return chart ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	403 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	404
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	405 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	406 * Returns hash use to init HightChart line.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	407 * @param pTitle {String} The title of the chart.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	408 * @param pXTitle {String} The xAxis title.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	409 * @param pYTitle {String} The yAxis title.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	410 * @param pXCategories {Array} x scale labels.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	411 * @param pData {Array} The HightChart series.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	412 * @return {Hash} Parameters to use in Highchart's constructor.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	413 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	414 var lineplot_param = function(pTitle, pXTitle, pYTitle, pXCategories, pData) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	415 var chart = chartplot( pTitle, pXTitle, pYTitle, pXCategories, pData );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	416 chart['chart'] = {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	417 type: 'line',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	418 zoomType: 'x',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	419 selectionMarkerFill: "rgb(222,159,115,0.25)",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	420 exporting:{buttons: {contextButton: { symbol: 'download' }}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	421 buttons: {contextButton: {menuItems: ['downloadPNG', 'downloadSVG']}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	422 navigation: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	423 buttonOptions: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	424 theme: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	425 r: 4,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	426 fill:'#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	427 states: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	428 hover: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	429 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	430 stroke:'#8EADAC'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	431 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	432 select: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	433 stroke: '#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	434 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	435 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	436 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	437 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	438 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	439 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	440 };
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	441 chart['yAxis']['min'] = 0 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	442 chart['legend'] = {'enabled': true};
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	443 chart['plotOptions'] = {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	444 area: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	445 marker: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	446 enabled: true,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	447 symbol: 'circle',radius:4,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	448 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	449 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	450 };
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	451 return chart ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	452 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	453
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	454 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	455 * Returns hash use to init HightChart column.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	456 * @param pTitle {String} The title of the chart.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	457 * @param pYTitle {String} The yAxis title.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	458 * @param pCategories {Array} x scale labels.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	459 * @param pSeries {Array} The HightChart series.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	460 * @param unity {String} Unity used in tooltip.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	461 * @return {Hash} Parameters to use in Highchart's constructor.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	462 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	463 var barplot_param = function( pTitle, pYTitle, pCategories, pSeries, unity ) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	464 return {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	465 chart: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	466 type: 'column',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	467 zoomType: 'y'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	468 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	469 title: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	470 text: pTitle
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	471 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	472 xAxis: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	473 categories: pCategories,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	474 crosshair: true
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	475 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	476 exporting:{buttons: {contextButton: { symbol: 'download' }}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	477 buttons: {contextButton: {menuItems: ['downloadPNG', 'downloadSVG']}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	478 navigation: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	479 buttonOptions: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	480 theme: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	481 r: 4,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	482 fill:'#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	483 states: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	484 hover: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	485 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	486 stroke:'#8EADAC'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	487 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	488 select: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	489 stroke: '#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	490 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	491 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	492 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	493 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	494 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	495 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	496 yAxis: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	497 min: 0,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	498 title: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	499 text: pYTitle
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	500 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	501 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	502 tooltip: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	503 headerFormat: '<span style="font-size:10px">{point.key}</span><table>',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	504 pointFormat: '<tr><td style="color:{series.color};padding:0">{series.name}: </td>' +
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	505 '<td style="padding:0"><b>{point.y} ' + unity + '</b></td></tr>',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	506 footerFormat: '</table>',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	507 shared: true,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	508 useHTML: true
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	509 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	510 plotOptions: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	511 column: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	512 pointPadding: 0.2,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	513 borderWidth: 0
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	514 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	515 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	516 credits: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	517 enabled: false
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	518 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	519 series: pSeries
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	520 };
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	521 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	522
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	523 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	524 * Returns the list of human readable intervals from The list of right threshold.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	525 * @param categories {Array} The list of right threshold.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	526 * @return {Hash} The formatted hash.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	527 * @example: [ 50, 60, 70 ] => [ "[0% - 50%[", "[50% - 60%[", "[60% - 70%[", "[70]" ]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	528 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	529 var get_displayed_categories = function( categories ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	530 displayed_categories = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	531 var prev = 0 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	532 for( var idx = 0 ; idx < categories.length ; idx++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	533 if( idx != (categories.length - 1) ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	534 displayed_categories.push( "[" + prev + "% - " + categories[idx] + "%[" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	535 } else {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	536 if( prev != (categories[idx] - 1) ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	537 displayed_categories.push( "[" + prev + "% - " + (categories[idx] - 1) + "%[" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	538 } else {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	539 displayed_categories.push( "[" + prev + "%]" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	540 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	541 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	542 prev = categories[idx] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	543 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	544 return displayed_categories ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	545 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	546
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	547 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	548 //
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	549 // Nav templates
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	550 //
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	551 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	552 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	553 * Returns from alignment data an hash formatted to use in heatmap series.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	554 * @param categories_ident {Array} The list of right threshold for each x category in heatmap.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	555 * @param categories_cover {Array} The list of right threshold for each y category in heatmap.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	556 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	557 * @return {Hash} The formatted hash.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	558 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	559 var get_alignment_heatmap_data = function( categories_ident, categories_cover, data_type ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	560 var heatmap_data = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	561
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	562 // Data sum by categories
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	563 var scores_by_category = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	564 for( var data_idx = 0 ; data_idx < alignment_scores.length ; data_idx++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	565 ident_idx = 0 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	566 while( alignment_scores[data_idx][0] >= categories_ident[ident_idx] ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	567 ident_idx++ ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	568 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	569 cover_idx = 0 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	570 while( alignment_scores[data_idx][1] >= categories_cover[cover_idx] ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	571 cover_idx++ ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	572 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	573 if( !scores_by_category.hasOwnProperty(ident_idx) ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	574 scores_by_category[ident_idx] = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	575 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	576 if( !scores_by_category[ident_idx].hasOwnProperty(cover_idx) ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	577 scores_by_category[ident_idx][cover_idx] = 0 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	578 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	579 scores_by_category[ident_idx][cover_idx] += alignment_scores[data_idx][2][data_type] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	580 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	581
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	582 // Data to heatmap data format
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	583 for( var ident_idx = 0 ; ident_idx < categories_ident.length ; ident_idx++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	584 for( var cover_idx = 0 ; cover_idx < categories_cover.length ; cover_idx++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	585 if( scores_by_category.hasOwnProperty(ident_idx) && scores_by_category[ident_idx].hasOwnProperty(cover_idx) ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	586 heatmap_data.push([
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	587 ident_idx,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	588 cover_idx,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	589 scores_by_category[ident_idx][cover_idx]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	590 ]);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	591 } else {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	592 heatmap_data.push([
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	593 ident_idx,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	594 cover_idx,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	595 ""
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	596 ]);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	597 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	598 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	599 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	600
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	601 return heatmap_data ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	602 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	603
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	604 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	605 * Returns hash use to init an HightChart heatmap with alignment distribution.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	606 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	607 * @return {Hash} The hash.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	608 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	609 var alignment_param = function( data_type ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	610 if( data_type == null ){ data_type = "clstr" ; }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	611
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	612 // Parameters
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	613 var clean_type = {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	614 "clstr": "OTUs",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	615 "seq": "sequences"
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	616 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	617 var categories_ident = [1, 50, 80, 90, 95, 99, 100, 101];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	618 var categories_cover = [1, 50, 80, 90, 95, 99, 100, 101];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	619
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	620 // Chart
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	621 var chart = {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	622 chart: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	623 type: 'heatmap'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	624 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	625 title: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	626 text: 'Number of ' + clean_type[data_type] + ' among their alignment results'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	627 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	628 exporting:{buttons: {contextButton: { symbol: 'download' }}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	629 buttons: {contextButton: {menuItems: ['downloadPNG', 'downloadSVG']}},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	630 navigation: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	631 buttonOptions: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	632 theme: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	633 r: 4,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	634 fill:'#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	635 states: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	636 hover: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	637 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	638 stroke:'#8EADAC'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	639 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	640 select: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	641 stroke: '#8EADAC',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	642 fill: 'rgb(100, 138, 137)',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	643 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	644 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	645 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	646 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	647 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	648 xAxis: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	649 categories: get_displayed_categories(categories_ident),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	650 title: {text: 'Identity'},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	651 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	652 yAxis: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	653 categories: get_displayed_categories(categories_cover),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	654 title: {text: 'Coverage'},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	655 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	656 colorAxis: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	657 min: 0,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	658 minColor: '#FFFFFF',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	659 maxColor: Highcharts.getOptions().colors[0]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	660 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	661 legend: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	662 align: 'right',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	663 layout: 'vertical',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	664 margin: 0,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	665 verticalAlign: 'top',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	666 y: 25,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	667 symbolHeight: 280
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	668 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	669 tooltip: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	670 formatter: function () {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	671 return 'Identity: <b>' + this.series.xAxis.categories[this.point.x] + '</b><br>'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	672 + ' Coverage: <b>' + this.series.yAxis.categories[this.point.y] + '</b><br>'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	673 + ' Nb ' + clean_type[data_type] + ': <b>' + ((this.point.value == "") ? 0 : this.point.value) + '</b>' ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	674 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	675 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	676 credits: {enabled: false},
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	677 /*exporting: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	678 sourceHeight: 400,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	679 sourceWidth: 850
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	680 },*/
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	681 series: [{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	682 name: clean_type[data_type],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	683 borderWidth: 1,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	684 data: get_alignment_heatmap_data( categories_ident, categories_cover, data_type ),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	685 dataLabels: {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	686 enabled: true,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	687 color: '#000000'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	688 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	689 }]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	690 };
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	691
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	692 return chart ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	693 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	694
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	695 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	696 * Returns from bootstrap data for one taxonomic rank an hash formatted to use in tag data in one barplot series.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	697 * @param bootstrap_categories {Array} The list of right threshold for each x category in barplot.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	698 * @param scores {Hash} The bootstrap data for one taxonomic rank.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	699 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	700 * @return {Hash} The formatted hash.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	701 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	702 var get_bootstrap_barplot_data = function( bootstrap_categories, scores, data_type ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	703 var formated_data = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	704
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	705 // Data to hash by category
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	706 var scores_by_xCategory = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	707 for( var bootstrap in scores ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	708 bootstrap_idx = 0 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	709 while( bootstrap >= bootstrap_categories[bootstrap_idx] ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	710 bootstrap_idx++ ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	711 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	712 if( !scores_by_xCategory.hasOwnProperty(bootstrap_idx) ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	713 scores_by_xCategory[bootstrap_idx] = 0 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	714 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	715 scores_by_xCategory[bootstrap_idx] += scores[bootstrap][data_type] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	716 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	717
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	718 // Data to series data format
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	719 for( var bootstrap_idx = 0 ; bootstrap_idx < bootstrap_categories.length ; bootstrap_idx++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	720 if( scores_by_xCategory.hasOwnProperty(bootstrap_idx) ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	721 formated_data.push( scores_by_xCategory[bootstrap_idx] );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	722 } else {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	723 formated_data.push( 0 );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	724 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	725 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	726
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	727 return formated_data ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	728 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	729
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	730 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	731 * Returns hash use to init an HightChart barplot with bootstrap distribution.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	732 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	733 * @return {Hash} The hash.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	734 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	735 var bootstrap_param = function( data_type ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	736 if( data_type == null ){ data_type = "clstr" ; }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	737
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	738 // Parameters
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	739 var clean_type = {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	740 "clstr": "OTUs",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	741 "seq": "sequences"
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	742 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	743 var bootstrap_categories = [50, 80, 90, 95, 100, 101];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	744
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	745 // Data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	746 var histogram_series = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	747 for( var taxonomic_rank in bootstrap_scores ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	748 histogram_series.push({
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	749 "name": taxonomic_rank,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	750 "data": get_bootstrap_barplot_data( bootstrap_categories, bootstrap_scores[taxonomic_rank], data_type ),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	751 "index": taxonomic_ranks.indexOf( taxonomic_rank )
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	752 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	753 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	754
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	755 // Chart
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	756 return(
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	757 barplot_param(
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	758 'Number of ' + clean_type[data_type] + ' by bootstrap on affiliation',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	759 'Nb ' + clean_type[data_type],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	760 get_displayed_categories(bootstrap_categories),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	761 histogram_series,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	762 clean_type[data_type]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	763 )
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	764 );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	765 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	766
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	767 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	768 * Add listener to update content of rarefaction-modal.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	769 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	770 var add_rarefaction_listeners = function() {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	771 $('#rarefaction-modal').on('shown.bs.modal', function (e) { // Draw curves when modal is shown
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	772 // Select data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	773 var selected_level = $('#rarefaction-level').val() ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	774 var selected_series = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	775 $('input[id^="taxBySample-chk-"]').each( function(){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	776 if( $(this).is(':checked')){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	777 var selected_sample = $(this).prop('id').substring(16, $(this).prop('id').length) ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	778 var series_data = new Array([0, 0]); // Add the zero point to curve
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	779 for( var sampling_idx = 0 ; sampling_idx < rarefaction[selected_sample][selected_level].length ; sampling_idx++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	780 series_data.push([
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	781 (sampling_idx+1)*rarefaction_step,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	782 rarefaction[selected_sample][selected_level][sampling_idx]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	783 ]);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	784 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	785 selected_series.push({
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	786 'name': selected_sample,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	787 'data': series_data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	788 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	789 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	790 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	791 // Draw chart
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	792 $('#rarefaction-chart').highcharts( lineplot_param("Rarefaction curves", "Nb sampled sequences", "Nb " + selected_level, null, selected_series) );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	793 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	794 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	795
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	796 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	797 * Add listener to update content of sunburst-modal.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	798 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	799 var add_sunburst_listeners = function() {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	800 $('#sunburst-modal').on('shown.bs.modal', function (event) { // Draw sunburst when modal is shown
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	801 // Clean previous chart
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	802 $('#sunburst-graph').empty() ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	803 $('#sunburst-walktrace').empty() ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	804 $('#sunburst-menu').empty() ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	805 $('#sunburst-detail').empty() ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	806
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	807 // Select data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	808 var tree = ExtendedNode.fromNewick( tree_distribution );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	809 if( event.relatedTarget.id == "display-spl-sunburst" ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	810 var selected_samples = new Array();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	811 $('input[id^="taxBySample-chk-"]').each( function(){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	812 if( $(this).is(':checked')){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	813 var sample_name = $(this).prop('id').substring(16, $(this).prop('id').length) ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	814 selected_samples.push( samples_names.indexOf(sample_name) );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	815 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	816 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	817 tree.keepOnlySamples( selected_samples );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	818 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	819 // Draw chart
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	820 cJDistrib(
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	821 tree.toJson(),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	822 {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	823 "pg_selector": {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	824 "sunburst": "#sunburst-graph",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	825 "walktrace": "#sunburst-walktrace",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	826 "menu": "#sunburst-menu",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	827 "detail": "#sunburst-detail"
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	828 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	829 "graph": {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	830 "sunburst": {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	831 "width": Math.min($("#sunburst-graph").width(), $(window).height()),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	832 "height": Math.min($("#sunburst-graph").width(), $(window).height()),
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	833 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	834 "colors": {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	835 "start_depth": 2
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	836 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	837 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	838 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	839 );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	840
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	841 // Center sunburst
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	842 $("#sunburst-graph").width( Math.min($("#sunburst-graph").width(), $(window).height()) );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	843 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	844 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	845
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	846 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	847 * disable/enable buttons in "taxonomy distribution" datatable.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	848 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	849 var updateTaxButtonState = function(){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	850 //$("#display-rarefaction").removeClass( "disabled" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	851 $("#display-rarefaction").prop('disabled', false);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	852 //$("#display-spl-sunburst").removeClass( "disabled" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	853 $("#display-spl-sunburst").prop('disabled', false);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	854 if( $('input[id^="taxBySample-chk-"]:checked').length == 0 ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	855 $("#display-rarefaction").prop( "disabled" , true);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	856 $("#display-spl-sunburst").prop( "disabled" ,true );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	857 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	858 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	859
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	860 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	861 * Loads content of "taxonomy distribution" nav.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	862 * @param cotainer_id {String} The ID of the content where the information will be added.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	863 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	864 var taxBySample_load = function( container_id ) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	865 // Table titles
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	866 //var titles = [ '<input id="taxBySample-check-all" type="checkbox" value="1">', "Samples" ];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	867 var titles = ['<label class="container"><input type="checkbox" id="taxBySample-check-all" value="1"><span class="checkmark"></span></label>','Samples'];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	868 for( var rank = 0 ; rank < taxonomic_ranks.length ; rank++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	869 titles.push( "Nb " + taxonomic_ranks[rank].toLowerCase() );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	870 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	871 titles.push( "Nb sequences" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	872 $('#taxBySample-table thead').append( '<tr><th>' + titles.join("</th><th>") + '</th></tr>' );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	873 $('#taxBySample-table .title').attr( "colspan", titles.length );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	874 $('#taxBySample-table tfoot th').each(function(){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	875 $(this).attr( "colspan", titles.length );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	876 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	877
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	878 // Table data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	879 for( var sample_idx = 0 ; sample_idx < samples_names.length ; sample_idx++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	880 var sample_name = samples_names[sample_idx] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	881 var tree = ExtendedNode.fromNewick( tree_distribution );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	882 tree.keepOnlySamples( [sample_idx] );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	883 //var sample_data = [ '<input id="taxBySample-chk-' + sample_name + '" type="checkbox" value="1">', sample_name ];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	884 var sample_data = ['<label class="container"><input type="checkbox" id="taxBySample-chk-' + sample_name + '" value="1"><span class="checkmark"></span></label>',sample_name];
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	885 for( var rank = 0 ; rank < taxonomic_ranks.length ; rank++ ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	886 sample_data.push( numberDisplay(tree.getNodeByDepth(rank+1).length) );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	887 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	888 sample_data.push( numberDisplay(rarefaction[sample_name]['nb_seq']) );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	889 // Add row data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	890 $('#taxBySample-table tbody').append( '<tr><td>' + sample_data.join("</td><td>") + '</td></tr>' );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	891 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	892
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	893 // Buttons enable/disable management
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	894 $('input[id^="taxBySample-check-all"]').on( 'change', updateTaxButtonState );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	895 $('input[id^="taxBySample-chk-"]').on( 'change', updateTaxButtonState );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	896
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	897 // Check all management
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	898 $('#taxBySample-check-all').on('click', function (e) { // Manage check all
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	899 if( $(this).is(':checked') ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	900 $('input[id^="taxBySample-chk-"]').each( function(){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	901 $(this).prop( 'checked', true );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	902 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	903 } else {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	904 $('input[id^="taxBySample-chk-"]').each( function(){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	905 $(this).prop( 'checked', false );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	906 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	907 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	908 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	909 $('input[id^="taxBySample-chk-"]').on('change', function (e) { // Uncheck select all when uncheck one sample
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	910 if( !$(this).is(':checked') && $('#taxBySample-check-all').is(':checked') ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	911 $('#taxBySample-check-all').prop( 'checked', false );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	912 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	913 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	914
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	915 // Datatable
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	916 $('#taxBySample-table').DataTable({
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	917 //"sDom": '<"top"<"#taxBySample-csv-export"><"clear">lf>rt<"bottom"ip><"clear">',
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	918 dom: "<'#taxBySample-csv-export'><'row'<'col-sm-5'l><'col-sm-7'f>>" +
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	919 "<'row'<'col-sm-12'tr>>" +
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	920 "<'row'<'col-sm-5'i><'col-sm-7'p>>",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	921 'order': [[1, 'asc']],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	922 'columnDefs': [{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	923 'targets': [0],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	924 'orderable': false
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	925 }],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	926 "fnDrawCallback": updateTaxButtonState
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	927 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	928 // Datatable export
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	929 $('#taxBySample-csv-export').addClass( 'dataTables_filter' );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	930 $('#taxBySample-csv-export').html( '<button class="btn"><span class="fa fa-download" aria-hidden="true"> CSV</span></button>' );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	931 $('#taxBySample-csv-export').datatableExport({
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	932 'table_id': "taxBySample-table",
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	933 'omitted_columns': [0]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	934 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	935
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	936
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	937
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	938 // Rarefaction select options
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	939 var select_lvl_options = "" ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	940 $.each( rarefaction_ranks, function( idx, level ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	941 if( level != "nb_seq" ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	942 select_lvl_options += '<option value="' + level + '">' + level.charAt(0).toUpperCase() + level.slice(1) + '</option>'
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	943 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	944 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	945 $('#rarefaction-level').html( select_lvl_options );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	946
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	947 // Add listeners
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	948 add_sunburst_listeners() ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	949 add_rarefaction_listeners() ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	950 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	951
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	952 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	953 * Loads content of "alignment distribution" nav.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	954 * @param cotainer_id {String} The ID of the content where the information will be added.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	955 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	956 var alignment_score_load = function( cotainer_id ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	957 $('#' + cotainer_id).highcharts( alignment_param() );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	958
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	959 $('#heatmap-clstr-btn').on('click', function (e) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	960 $('#heatmap-seq-btn').prop('disabled', false );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	961 $('#heatmap-clstr-btn').prop('disabled', true );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	962 $('#' + cotainer_id).highcharts( alignment_param("clstr") );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	963 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	964 $('#heatmap-seq-btn').on('click', function (e) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	965 $('#heatmap-clstr-btn').prop('disabled', false );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	966 $('#heatmap-seq-btn').prop('disabled', true );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	967 $('#' + cotainer_id).highcharts( alignment_param("seq") );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	968 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	969 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	970
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	971 /**
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	972 * Loads content of "bootstrap distribution" nav.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	973 * @param cotainer_id {String} The ID of the content where the information will be added.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	974 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	975 var bootstrap_score_load = function( cotainer_id ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	976 $('#' + cotainer_id).highcharts( bootstrap_param() );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	977
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	978 $('#bootstrap-clstr-btn').on('click', function (e) { // Display view by OTUs
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	979 if( $('#bootstrap-clstr-btn').hasClass("btn-default") ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	980 $('#bootstrap-clstr-btn').removeClass( "btn-default" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	981 $('#bootstrap-clstr-btn').addClass( "btn-primary" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	982 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	983 if( $('#bootstrap-seq-btn').hasClass("btn-primary") ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	984 $('#bootstrap-seq-btn').removeClass( "btn-primary" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	985 $('#bootstrap-seq-btn').addClass( "btn-default" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	986 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	987 $('#' + cotainer_id).highcharts( bootstrap_param("clstr") );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	988 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	989
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	990 $('#bootstrap-seq-btn').on('click', function (e) { // Display view by sequences
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	991 if( $('#bootstrap-seq-btn').hasClass("btn-default") ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	992 $('#bootstrap-seq-btn').removeClass( "btn-default" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	993 $('#bootstrap-seq-btn').addClass( "btn-primary" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	994 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	995 if( $('#bootstrap-clstr-btn').hasClass("btn-primary") ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	996 $('#bootstrap-clstr-btn').removeClass( "btn-primary" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	997 $('#bootstrap-clstr-btn').addClass( "btn-default" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	998 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	999 $('#' + cotainer_id).highcharts( bootstrap_param("seq") );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1000 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1001 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1002
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1003
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1004
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1005 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1006 //
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1007 // Data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1008 //
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1009 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1010 var taxonomic_ranks = ["Domain", "Phylum", "Class", "Order", "Family", "Genus", "Species"] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1011 /* Example:
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1012 ["Domain", "Phylum", "Class", "Order", "Family", "Genus", "Species"]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1013 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1014 var samples_names = ["01", "02", "03"] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1015 /* Example:
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1016 ["Surface-01", "Surface-02", "Surface-03", "Middle-01", "Middle-02", "Middle-03"]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1017 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1018 var tree_distribution = "((((((((\"s__Trichoderma_cremeum\":{\"1\": 297, \"0\": 295, \"2\": 327},\"s__Trichoderma_aggressivum\":{\"1\": 326, \"0\": 290, \"2\": 343},\"s__Trichoderma_mienum\":{\"1\": 328, \"0\": 325, \"2\": 305},\"s__Trichoderma_rhododendri\":{\"1\": 7, \"0\": 13, \"2\": 7},\"s__Trichoderma_rodmanii\":{\"1\": 300, \"0\": 309, \"2\": 318})\"g__Trichoderma\")\"f__Hypocreaceae\")\"o__Hypocreales\",(((\"s__Pestalotiopsis_diversiseta\":{\"1\": 288, \"0\": 320, \"2\": 302})\"g__Pestalotiopsis\",(\"s__Adisciso_tricellulare\":{\"1\": 318, \"0\": 290, \"2\": 307})\"g__Adisciso\")\"f__Amphisphaeriaceae\",((\"s__Hypoxylon_fragiforme\":{\"1\": 354, \"0\": 321, \"2\": 266})\"g__Hypoxylon\")\"f__Xylariaceae\")\"o__Xylariales\",(((\"s__Phaeoacremonium_rubrigenum\":{\"1\": 271, \"0\": 339, \"2\": 327})\"g__Phaeoacremonium\")\"f__Togniniaceae\")\"o__Diaporthales\")\"c__Sordariomycetes\",((((\"s__Elaphomyces_compleximurus\":{\"1\": 299, \"0\": 323, \"2\": 303})\"g__Elaphomyces\")\"f__Elaphomycetaceae\",((\"s__Rasamsonia_emersonii\":{\"1\": 301, \"0\": 312, \"2\": 333})\"g__Rasamsonia\",(\"s__Aspergillus_caninus\":{\"1\": 123, \"0\": 113, \"2\": 101},\"s__Aspergillus_microcysticus\":{\"1\": 13, \"0\": 19, \"2\": 12})\"g__Aspergillus\")\"f__Trichocomaceae\")\"o__Eurotiales\",(((\"s__Exophiala_equina\":{\"1\": 302, \"0\": 320, \"2\": 323})\"g__Exophiala\")\"f__Herpotrichiellaceae\")\"o__Chaetothyriales\")\"c__Eurotiomycetes\",((((\"s__Leptosphaeria_polylepidis\":{\"1\": 14, \"0\": 9, \"2\": 22})\"g__Leptosphaeria\")\"f__Leptosphaeriaceae\",((\"s__Lindgomyces_breviappendiculatus\":{\"1\": 299, \"0\": 339, \"2\": 333})\"g__Lindgomyces\")\"f__Lindgomycetaceae\")\"o__Pleosporales\")\"c__Dothideomycetes\",((((\"s__Terfezia_claveryi\":{\"1\": 318, \"0\": 337, \"2\": 317})\"g__Terfezia\")\"f__Pezizaceae\",((\"s__Tuber_latisporum\":{\"1\": 318, \"0\": 320, \"2\": 310})\"g__Tuber\")\"f__Tuberaceae\")\"o__Pezizales\")\"c__Pezizomycetes\")\"p__Ascomycota\",(((((\"s__Amanita_friabilis\":{\"1\": 3, \"0\": 3, \"2\": 4},\"s__Amanita_franchetii\":{\"1\": 318, \"0\": 321, \"2\": 319})\"g__Amanita\")\"f__Amanitaceae\",((\"s__Entoloma_sp\":{\"1\": 351, \"0\": 299, \"2\": 292})\"g__Entoloma\")\"f__Entolomataceae\",((\"s__Tricholoma_portentosum\":{\"1\": 300, \"0\": 324, \"2\": 302})\"g__Tricholoma\",(\"s__Gamundia_leucophylla\":{\"1\": 324, \"0\": 301, \"2\": 298})\"g__Gamundia\")\"f__Tricholomataceae\",((\"s__Inocybe_sindonia\":{\"1\": 335, \"0\": 329, \"2\": 308})\"g__Inocybe\")\"f__Inocybaceae\",((\"s__Pholiota_highlandensis\":{\"1\": 315, \"0\": 294, \"2\": 313})\"g__Pholiota\",(\"s__Hypholoma_capnoides\":{\"1\": 311, \"0\": 350, \"2\": 287})\"g__Hypholoma\")\"f__Strophariaceae\",((\"s__Gymnopus_hybridus\":{\"1\": 291, \"0\": 328, \"2\": 332})\"g__Gymnopus\")\"f__Omphalotaceae\",((\"s__Megacollybia_subfurfuracea\":{\"1\": 297, \"0\": 295, \"2\": 294})\"g__Megacollybia\")\"f__Marasmiaceae\",((\"s__Coprinopsis_candidolanata\":{\"1\": 319, \"0\": 304, \"2\": 306},\"s__Coprinopsis_pachyderma\":{\"1\": 303, \"0\": 310, \"2\": 341})\"g__Coprinopsis\",(\"s__Psathyrella_multipedata\":{\"1\": 308, \"0\": 334, \"2\": 299},\"s__Psathyrella_sublatispora\":{\"1\": 310, \"0\": 283, \"2\": 321})\"g__Psathyrella\")\"f__Psathyrellaceae\",((\"s__Phaeocollybia_kauffmanii\":{\"1\": 303, \"0\": 317, \"2\": 289})\"g__Phaeocollybia\",(\"s__Cortinarius_caesiocolor\":{\"1\": 332, \"0\": 286, \"2\": 300},\"s__Cortinarius_gentianeus\":{\"1\": 292, \"0\": 317, \"2\": 323},\"s__Cortinarius_limonius\":{\"1\": 318, \"0\": 293, \"2\": 336},\"s__Cortinarius_parkeri\":{\"1\": 44, \"0\": 31, \"2\": 49},\"s__Cortinarius_calojanthinus\":{\"1\": 331, \"0\": 299, \"2\": 285},\"s__Cortinarius_sinapivelus\":{\"1\": 288, \"0\": 302, \"2\": 338},\"s__Cortinarius_amnicola\":{\"1\": 294, \"0\": 316, \"2\": 307},\"s__Cortinarius_aurantiobasis\":{\"1\": 323, \"0\": 342, \"2\": 281})\"g__Cortinarius\")\"f__Cortinariaceae\",((\"s__Lepiota_geogenia\":{\"1\": 306, \"0\": 313, \"2\": 328})\"g__Lepiota\")\"f__Agaricaceae\")\"o__Agaricales\",(((\"s__Sarcodon_quercophilus\":{\"1\": 293, \"0\": 335, \"2\": 311})\"g__Sarcodon\",(\"s__Hydnellum_suaveolens\":{\"1\": 304, \"0\": 316, \"2\": 317},\"s__Hydnellum_peckii\":{\"1\": 294, \"0\": 286, \"2\": 285})\"g__Hydnellum\")\"f__Bankeraceae\",((\"s__Thelephora_atra\":{\"1\": 11, \"0\": 9, \"2\": 10})\"g__Thelephora\")\"f__Thelephoraceae\")\"o__Thelephorales\",(((\"s__Alpova_corsicus\":{\"1\": 299, \"0\": 310, \"2\": 284},\"s__Alpova_alpestris\":{\"1\": 308, \"0\": 334, \"2\": 322})\"g__Alpova\")\"f__Paxillaceae\",((\"s__Xerocomus_porophyllus\":{\"1\": 310, \"0\": 293, \"2\": 290})\"g__Xerocomus\")\"f__Boletaceae\",((\"s__Truncocolumella_rubra\":{\"1\": 292, \"0\": 320, \"2\": 307})\"g__Truncocolumella\")\"f__Suillaceae\")\"o__Boletales\",(((\"s__Pseudochaete_subrigidula\":{\"1\": 331, \"0\": 311, \"2\": 328})\"g__Pseudochaete\",(\"s__Hymenochaete_longispora\":{\"1\": 318, \"0\": 339, \"2\": 345})\"g__Hymenochaete\")\"f__Hymenochaetaceae\")\"o__Hymenochaetales\",(((\"s__Lactarius_sp\":{\"1\": 324, \"0\": 304, \"2\": 307},\"s__Lactarius_semisanguifluus\":{\"1\": 317, \"0\": 302, \"2\": 332},\"s__Lactarius_cyathuliformis\":{\"1\": 347, \"0\": 323, \"2\": 321})\"g__Lactarius\")\"f__Russulaceae\")\"o__Russulales\")\"c__Agaricomycetes\")\"p__Basidiomycota\")\"k__Fungi\")\"Root\")\"root\"" ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1019 /* This string is in newick extended format. The metadata is the count by sample (each sample is referenced by is index position in "samples_names"). */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1020 var rarefaction = {"02": {"nb_seq": 15140, "Genus": [27, 27, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28], "Species": [35, 35, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36], "Family": [12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12]}, "03": {"nb_seq": 15167, "Genus": [27, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28], "Species": [35, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36], "Family": [12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12]}, "01": {"nb_seq": 15267, "Genus": [26, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28, 28], "Species": [34, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36, 36], "Family": [12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12]}} ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1021 /* Example:
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1022 {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1023 "Surface-01": {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1024 "nb_seq": 7115,
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1025 "Genus": [108, 164, 196, 226, 252, 252, 252],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1026 "Species": [108, 164, 196, 227, 253, 268, 287],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1027 "Family": [85, 119, 133, 146, 154, 163, 169]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1028 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1029 "Surface-02": {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1030 ...
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1031 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1032 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1033 var rarefaction_step = 432 ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1034 /* Example:
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1035 1000
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1036 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1037 var rarefaction_ranks = ["Family", "Genus", "Species"] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1038 /* Example:
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1039 ["Family", "Genus", "Species"]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1040 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1041 var alignment_scores = [[75.25, 100.0, {"seq": 12, "clstr": 1}], [77.25, 100.0, {"seq": 10, "clstr": 1}], [77.05, 100.0, {"seq": 18, "clstr": 1}], [63.07, 100.0, {"seq": 13, "clstr": 1}], [84.03, 100.0, {"seq": 32, "clstr": 2}], [81.24, 100.0, {"seq": 9, "clstr": 1}], [73.85, 100.0, {"seq": 18, "clstr": 1}], [80.6, 100.0, {"seq": 12, "clstr": 1}], [82.04, 100.0, {"seq": 9, "clstr": 1}], [79.24, 100.0, {"seq": 25, "clstr": 2}], [80.84, 100.0, {"seq": 7, "clstr": 1}], [77.2, 100.0, {"seq": 941, "clstr": 1}], [79.64, 100.0, {"seq": 15, "clstr": 1}], [76.45, 100.0, {"seq": 7, "clstr": 1}], [83.8, 100.0, {"seq": 836, "clstr": 1}], [79.8, 100.0, {"seq": 910, "clstr": 1}], [81.4, 100.0, {"seq": 12, "clstr": 1}], [79.0, 100.0, {"seq": 12, "clstr": 1}], [65.87, 100.0, {"seq": 11, "clstr": 1}], [63.87, 100.0, {"seq": 10, "clstr": 1}], [78.84, 100.0, {"seq": 18, "clstr": 2}], [82.83, 100.0, {"seq": 8, "clstr": 1}], [100.0, 100.0, {"seq": 42530, "clstr": 53}], [82.4, 100.0, {"seq": 17, "clstr": 1}], [79.4, 100.0, {"seq": 8, "clstr": 1}], [77.45, 100.0, {"seq": 19, "clstr": 1}], [81.84, 100.0, {"seq": 18, "clstr": 2}], [80.04, 100.0, {"seq": 30, "clstr": 2}], [77.64, 100.0, {"seq": 7, "clstr": 1}]] ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1042 /* Example:
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1043 [
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1044 [100, 100, { "clstr": 53, "seq": 20500 }],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1045 [99, 100, { "clstr": 35, "seq": 18000 }],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1046 [90, 95, { "clstr": 1, "seq": 10 }],
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1047 ]
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1048 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1049 var bootstrap_scores = null ;
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1050 /* Example:
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1051 {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1052 "Phylum": {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1053 "80": { "clstr": 1, "seq":100 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1054 "90": { "clstr": 2, "seq":400 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1055 "100": { "clstr": 50, "seq":20000 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1056 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1057 "Genus":{
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1058 "80":{ "clstr": 1, "seq":100 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1059 "90":{ "clstr": 2, "seq":400 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1060 "100":{ "clstr": 50, "seq":20000 },
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1061 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1062 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1063 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1064
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1065
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1066 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1067 //
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1068 // Main
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1069 //
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1070 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1071 $(function() {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1072 // Remove alert
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1073 $('#js-alert').remove();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1074 $('#content').removeClass("hidden");
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1075
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1076 // Load active tab
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1077 taxBySample_load( "tax-distrib" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1078
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1079 // Hide tab if no data
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1080 if( alignment_scores == null ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1081 $('#alignment-nav-tab').remove();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1082 /*
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1083 $('#alignment-nav-tab').each( function(){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1084 $(this).addClass("hidden");
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1085 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1086 */
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1087 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1088 if( bootstrap_scores == null ){
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1089 $('#bootstrap-nav-tab').remove();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1090 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1091
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1092 // Add tab listener
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1093 $('.nav-tabs a').click(function (e) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1094 e.preventDefault();
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1095 $(this).tab('show');
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1096 if( $(this).attr('href') == "#bootstrap-distrib" && $('#bootstrap-distrib').prop('disabled',true) ) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1097 $('#bootstrap').prop("disabled",true);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1098 bootstrap_score_load( "bootstrap-barplot" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1099 } else if( $(this).attr('href') == "#alignment-distrib" && $('#alignment-distrib').prop('disabled',true) ) {
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1100 $('#alignment').prop("disabled",true);
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1101 alignment_score_load( "alignment-heatmap" );
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1102 }
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1103 })
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1104 });
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1105 </script>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1106 </head>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1107 <body>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1108 <p id="js-alert" class="alert alert-warning">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1109 javascript is needed to display data.<br />
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1110 If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1111 </p>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1112
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1113 <div id="content" class="hidden">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1114 <ul class="nav nav-tabs">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1115 <li class="nav-item active"><a class="nav-link active" href="#tax-distrib">Taxonomy distribution</a></li>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1116 <li class="nav-item" id="bootstrap-nav-tab"><a class="nav-link" href="#bootstrap-distrib">Bootstrap distribution</a></li>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1117 <li class="nav-item" id="alignment-nav-tab"><a class="nav-link" href="#alignment-distrib">Alignment distribution</a></li>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1118 </ul>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1119 <div id="tab-content" class="tab-content">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1120 <div id="tax-distrib" role="tabpanel" class="tab-pane active">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1121 <button id="display-global-sunburst" class="btn d-block mx-auto" data-toggle="modal" data-target="#sunburst-modal">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1122 <span class="fa fa-pie-chart" aria-hidden="true"> Display global distribution</span>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1123 </button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1124 <table id="taxBySample-table" class="table table-striped">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1125 <thead>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1126 </thead>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1127 <tbody></tbody>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1128 <tfoot>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1129 <tr>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1130 <th>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1131 <span class="table-action">With selection:</span>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1132 <select id="rarefaction-level" name="select" class="table-action fusion-left"></select>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1133 <button id="display-rarefaction" class="btn table-action fusion-right" disabled data-toggle="modal" data-target="#rarefaction-modal"><span class="fa fa-line-chart" aria-hidden="true"> Display rarefaction</span></button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1134 <button id="display-spl-sunburst" class="btn table-action" disabled data-toggle="modal" data-target="#sunburst-modal"><span class="fa fa-pie-chart" aria-hidden="true"> Display distribution</span></button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1135 </th>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1136 </tr>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1137 </tfoot>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1138 </table>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1139 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1140 <div id="bootstrap-distrib" role="tabpanel" class="tab-pane disabled">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1141 <div id="bootstrap-barplot"></div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1142 <div id="set-bootstrap-barplot" class="set-datatype">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1143 <button id="bootstrap-clstr-btn" type="button" class="btn btn-md btn-block">by OTUs</button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1144 <button id="bootstrap-seq-btn" type="button" class="btn btn-md btn-block">by sequences</button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1145 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1146 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1147 <div id="alignment-distrib" role="tabpanel" class="tab-pane disabled">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1148 <div id="alignment-heatmap"></div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1149 <div id="set-alignment-heatmap" class="set-datatype">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1150 <button id="heatmap-clstr-btn" type="button" class="btn btn-md btn-block" disabled>by OTUs</button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1151 <button id="heatmap-seq-btn" type="button" class="btn btn-md btn-block">by sequences</button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1152 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1153 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1154 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1155 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1156
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1157 <div class="modal" id="sunburst-modal" tabindex="-1" role="dialog" aria-hidden="true">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1158 <div class="modal-dialog modal-lg">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1159 <div class="modal-content">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1160 <div class="modal-header">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1161 <h6 class="modal-title">Taxa distribution</h6>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1162 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">×</span></button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1163 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1164 <div class="modal-body">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1165 <div id="sunburst-walktrace"></div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1166 <div id="sunburst-graph"></div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1167 <div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1168 </br><h6>Detail on selected:</h6>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1169 <div id="sunburst-detail"></div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1170 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1171 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1172 <div class="modal-footer">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1173 <span id="sunburst-menu"></span>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1174 <button type="button" class="btn btn-default" data-dismiss="modal"><span class="fa fa-close" aria-hidden="true"> Close</span> </button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1175 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1176 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1177 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1178 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1179 <div class="modal" id="rarefaction-modal" tabindex="-1" role="dialog" aria-hidden="true">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1180 <div class="modal-dialog modal-lg">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1181 <div class="modal-content">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1182 <div class="modal-header">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1183 <h6 class="modal-title">Rarefaction</h6>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1184 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">×</span></button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1185 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1186 <div class="modal-body">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1187 <div id="rarefaction-chart"></div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1188 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1189 <div class="modal-footer">
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1190 <button type="button" class="btn btn-default" data-dismiss="modal"><span class="fa fa-close" aria-hidden="true"> Close</span> </button>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1191 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1192 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1193 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1194 </div>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1195 </body>
59bc96331073 planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647 frogs parents: diff changeset	1196 </html>

Mercurial > repos > frogs > frogs_3_1_0

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