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comparison test-data/references/18-phylo_structure.log @ 0:59bc96331073 draft default tip

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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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1 ## Application
2 Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_structure.py (version : 3.1)
3 Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_structure.py --varExp EnvType --ordination-method MDS --rdata res/14-phylo_import.Rdata --distance-matrix res/Unifrac.tsv --html res/18-phylo_structure.html --log-file res/18-phylo_structure.log
4
5 ########################################################################################################
6 # Run 1 code Rmarkdown (Rscript version : [1] "R version 3.4.4 (2018-03-15)"
7 [1] "Rmarkdown version: 1.10"
8 [1] "Phyloseq version: 1.19.1")
9 Command:
10 Rscript -e "rmarkdown::render('/home/maria/workspace/git/FROGS/FROGS_master/app/r_structure.Rmd',output_file='/home/maria/workspace/git/FROGS/FROGS_master/test/res/18-phylo_structure.html', params=list(data='/home/maria/workspace/git/FROGS/FROGS_master/test/res/14-phylo_import.Rdata', varExp='EnvType',method='MDS',distance='/home/maria/workspace/git/FROGS/FROGS_master/test/res/Unifrac.tsv', libdir ='/home/maria/workspace/git/FROGS/FROGS_master/lib/external-lib'), intermediates_dir='/home/maria/workspace/git/FROGS/FROGS_master/test/res')" 2> /home/maria/workspace/git/FROGS/FROGS_master/test/res/1549620190.28_24114_rmarkdown.stderr
11
12 Execution:
13 start: 08 Feb 2019 11:03:14
14 end: 08 Feb 2019 11:03:27
15
16 ## Application
17 Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_structure.py (version : 3.1)
18 Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_structure.py --varExp EnvType --ordination-method MDS --rdata res/14-phylo_import.Rdata --distance-matrix res/Unifrac.tsv --html res/18-phylo_structure.html --log-file res/18-phylo_structure.log
19
20 ########################################################################################################
21 # Run 1 code Rmarkdown (Rscript version : [1] "R version 3.4.4 (2018-03-15)"
22 [1] "Rmarkdown version: 1.10"
23 [1] "Phyloseq version: 1.19.1")
24 Command:
25 Rscript -e "rmarkdown::render('/home/maria/workspace/git/FROGS/FROGS_master/app/r_structure.Rmd',output_file='/home/maria/workspace/git/FROGS/FROGS_master/test/res/18-phylo_structure.html', params=list(data='/home/maria/workspace/git/FROGS/FROGS_master/test/res/14-phylo_import.Rdata', varExp='EnvType',method='MDS',distance='/home/maria/workspace/git/FROGS/FROGS_master/test/res/Unifrac.tsv', libdir ='/home/maria/workspace/git/FROGS/FROGS_master/lib/external-lib'), intermediates_dir='/home/maria/workspace/git/FROGS/FROGS_master/test/res')" 2> /home/maria/workspace/git/FROGS/FROGS_master/test/res/1549623069.52_25554_rmarkdown.stderr
26
27 Execution:
28 start: 08 Feb 2019 11:51:12
29 end: 08 Feb 2019 11:51:24
30