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comparison test-data/references/10-biom2tsv.log @ 0:59bc96331073 draft default tip

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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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1 ## Application
2 Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/biom_to_tsv.py (version : 3.1)
3 Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/biom_to_tsv.py --input-biom res/06-affiliation.biom --input-fasta res/04-filters.fasta --output-tsv res/10-biom2tsv.tsv --output-multi-affi res/10-biom2tsv-affiliation_multihit.tsv --log-file res/10-biom2tsv.log
4
5 ########################################################################################################
6 # Converts a BIOM file in TSV file. (biom2tsv.py version : 1.4.1)
7 Command:
8 biom2tsv.py --input-file res/06-affiliation.biom --input-fasta res/04-filters.fasta --output-file res/10-biom2tsv.tsv --fields 'comment' 'blast_taxonomy' '@blast_subject' '@blast_perc_identity' '@blast_perc_query_coverage' '@blast_evalue' '@blast_aln_length' 'seed_id' '@seed_sequence' '@observation_name' '@observation_sum' '@sample_count'
9
10 Execution:
11 start: 13 Feb 2019 11:14:37
12 end: 13 Feb 2019 11:14:37
13
14 ########################################################################################################
15 # Extracts multi-affiliations data from a FROGS BIOM file. (multiAffiFromBiom.py version : 1.3.0)
16 Command:
17 multiAffiFromBiom.py --input-file res/06-affiliation.biom --output-file res/10-biom2tsv-affiliation_multihit.tsv
18
19 Execution:
20 start: 13 Feb 2019 11:14:37
21 end: 13 Feb 2019 11:14:37
22