comparison test-data/references/13-tree-mafft.log @ 0:59bc96331073 draft default tip

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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-1:000000000000 0:59bc96331073
1 ## Application
2 Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/tree.py (version : 3.1)
3 Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/tree.py --nb-cpus 4 --input-otu res/04-filters.fasta --biomfile res/06-affiliation.biom --out-tree res/13-tree-mafft.nwk --html res/13-tree-mafft.html --log-file res/13-tree-mafft.log
4
5 Number of input OTUs sequences: 86
6
7 ########################################################################################################
8 # Mafft multiple alignment. (mafft version : v7.407)
9 Command:
10 mafft --maxiterate 1000 --globalpair --thread 4 res/04-filters.fasta > res/1550052877.76_4235_mafft_aligned.fasta 2> res/1550052877.76_4235_mafft.stderr
11
12 Execution:
13 start: 13 Feb 2019 11:14:37
14 end: 13 Feb 2019 11:15:14
15
16 ########################################################################################################
17 # reconstruction a phylogenetic tree (FastTree version : 2.1.10)
18 Command:
19 FastTree -nt -gtr res/1550052877.76_4235_mafft_aligned.fasta > res/1550052877.76_4235_fasttree.nwk 2> res/1550052877.76_4235_fasttree.stderr
20
21 Execution:
22 start: 13 Feb 2019 11:15:14
23 end: 13 Feb 2019 11:15:19
24
25 ########################################################################################################
26 # root newick tree with phangorn R package midpoint function. (root_tree.R version : 1.0.0)
27 Command:
28 root_tree.R res/1550052877.76_4235_fasttree.nwk res/13-tree-mafft.nwk
29
30 Execution:
31 start: 13 Feb 2019 11:15:23
32 end: 13 Feb 2019 11:15:25
33