Mercurial > repos > frogs > frogs_3_1_0
comparison test-data/references/16-phylo_alpha_div.log @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author | frogs |
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date | Thu, 28 Feb 2019 10:14:49 -0500 |
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1 ## Application | |
2 Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_alpha_diversity.py (version : 3.1) | |
3 Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_alpha_diversity.py --varExp EnvType --rdata res/14-phylo_import.Rdata --alpha-measures Observed Chao1 Shannon --alpha-out res/16-phylo_alpha_div.tsv --html res/16-phylo_alpha_div.html --log-file res/16-phylo_alpha_div.log | |
4 | |
5 ######################################################################################################## | |
6 # Run 1 code Rmarkdown (Rscript version : [1] "R version 3.4.4 (2018-03-15)" | |
7 [1] "Rmarkdown version: 1.10" | |
8 [1] "Phyloseq version: 1.19.1") | |
9 Command: | |
10 Rscript -e "rmarkdown::render('/home/maria/workspace/git/FROGS/FROGS_master/app/r_alpha_diversity.Rmd',output_file='/home/maria/workspace/git/FROGS/FROGS_master/test/res/16-phylo_alpha_div.html', params=list(data='/home/maria/workspace/git/FROGS/FROGS_master/test/res/14-phylo_import.Rdata', measures='Observed,Chao1,Shannon', varExp='EnvType',fileAlpha='/home/maria/workspace/git/FROGS/FROGS_master/test/res/16-phylo_alpha_div.tsv', libdir ='/home/maria/workspace/git/FROGS/FROGS_master/lib/external-lib'), intermediates_dir='/home/maria/workspace/git/FROGS/FROGS_master/test/res')" 2> /home/maria/workspace/git/FROGS/FROGS_master/test/res/1549620149.26_24026_rmarkdown.stderr | |
11 | |
12 Execution: | |
13 start: 08 Feb 2019 11:02:32 | |
14 end: 08 Feb 2019 11:02:57 | |
15 | |
16 ## Application | |
17 Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_alpha_diversity.py (version : 3.1) | |
18 Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/r_alpha_diversity.py --varExp EnvType --rdata res/14-phylo_import.Rdata --alpha-measures Observed Chao1 Shannon --alpha-out res/16-phylo_alpha_div.tsv --html res/16-phylo_alpha_div.html --log-file res/16-phylo_alpha_div.log | |
19 | |
20 ######################################################################################################## | |
21 # Run 1 code Rmarkdown (Rscript version : [1] "R version 3.4.4 (2018-03-15)" | |
22 [1] "Rmarkdown version: 1.10" | |
23 [1] "Phyloseq version: 1.19.1") | |
24 Command: | |
25 Rscript -e "rmarkdown::render('/home/maria/workspace/git/FROGS/FROGS_master/app/r_alpha_diversity.Rmd',output_file='/home/maria/workspace/git/FROGS/FROGS_master/test/res/16-phylo_alpha_div.html', params=list(data='/home/maria/workspace/git/FROGS/FROGS_master/test/res/14-phylo_import.Rdata', measures='Observed,Chao1,Shannon', varExp='EnvType',fileAlpha='/home/maria/workspace/git/FROGS/FROGS_master/test/res/16-phylo_alpha_div.tsv', libdir ='/home/maria/workspace/git/FROGS/FROGS_master/lib/external-lib'), intermediates_dir='/home/maria/workspace/git/FROGS/FROGS_master/test/res')" 2> /home/maria/workspace/git/FROGS/FROGS_master/test/res/1549623031.57_25477_rmarkdown.stderr | |
26 | |
27 Execution: | |
28 start: 08 Feb 2019 11:50:35 | |
29 end: 08 Feb 2019 11:50:58 | |
30 |