Mercurial > repos > frogs > frogs_3_1_0
diff tool-data/frogs_db.loc.sample @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
| author | frogs |
|---|---|
| date | Thu, 28 Feb 2019 10:14:49 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/frogs_db.loc.sample Thu Feb 28 10:14:49 2019 -0500 @@ -0,0 +1,52 @@ +# Copyright (C) 2014 INRA +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 3 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. +# +# +#This is a sample file that enables tools FROGS_affiliations_OTU to use taxonomy database for +#taxonomy affiliation. You will need to create or download Blast+ index and train your database +#for RDP classifier these data files. +#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/assignation +#Finally you will need to create frogs_db.loc file similar to this one. +#The frogs_db.loc file has this format (longer white space characters are +#TAB characters): +# +#<unique_database_name> <printed_database_name> <file_path> +# +#Second column will be the visible name in galaxy. +#So, for example, if you had 16S silva 128 indexed stored in +#/galaxy_databanks/16S/silva_128/ +#then the frogs_db.loc entry would look like this: +# +#silva_128_16S silva 128 16S /galaxy_databanks/16S/silva_128/silva_128_16S.fasta +# +#and your /galaxy_databanks/16S/silva_128/ directory +#would contain index files: +# +#-rw-r--r-- 1 mbernard FROGS 8097966 5 déc. 16:56 bergeyTrainingTree.xml +#-rw-r--r-- 1 mbernard FROGS 1572981589 5 déc. 16:56 genus_wordConditionalProbList.txt +#-rw-r--r-- 1 mbernard FROGS 1654 5 déc. 16:56 LICENCE.txt +#-rw-r--r-- 1 mbernard FROGS 1072228 5 déc. 16:56 logWordPrior.txt +#-rw-r--r-- 1 mbernard FROGS 940834335 5 déc. 16:56 silva_128_16S.fasta +#-rw-r--r-- 1 mbernard FROGS 152606489 5 déc. 16:56 silva_128_16S.fasta.nhr +#-rw-r--r-- 1 mbernard FROGS 6918588 5 déc. 16:56 silva_128_16S.fasta.nin +#-rw-r--r-- 1 mbernard FROGS 205320030 5 déc. 16:56 silva_128_16S.fasta.nsq +#-rw-r--r-- 1 mbernard FROGS 281 5 déc. 16:56 silva_128_16S.fasta.properties +#-rw-r--r-- 1 mbernard FROGS 3420464 5 déc. 16:56 silva_128_16S.tax +#-rw-r--r-- 1 mbernard FROGS 964048 5 déc. 16:57 wordConditionalProbIndexArr.txt +# +# +#<value> <name> <file_path> +# +#ITS_test ITS1 extract <FROGS-wrappers>/test-data/databases/frogs_db_data/ITS1.rdp.fasta