Mercurial > repos > frogs > frogs_3_1_0
diff tool-data/phiX_db.loc.sample @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
| author | frogs |
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| date | Thu, 28 Feb 2019 10:14:49 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/phiX_db.loc.sample Thu Feb 28 10:14:49 2019 -0500 @@ -0,0 +1,41 @@ +# Copyright (C) 2014 INRA +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 3 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. +# +# +#This is a sample file that enables tools FROGS_filters to identify phix contaminant. You will #need to create or download Blast+ index. +#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/contaminants +#Finally you will need to create phiX_db.loc file similar to this one.The phiX_db.loc file has this format (longer white space characters are +#TAB characters): +# +#<unique_database_name> <printed_database_name> <file_path> +# +#Second column will be the visible name in galaxy. +#So, for example, if you had phix Blast+ indexed stored in +#/galaxy_databanks/phiX/ +#then the phiX_db.loc entry would look like this: +# +#phiX phiX /galaxy_databanks/phiX/phi.fa +# +#and your /galaxy_databanks/phiX/ directory +#would contain index files: +# +#-rwxrwxr-x 1 gpascal FROGS 5535 16 sept. 2015 phi.fa +#-rw-rwxr-- 1 gpascal FROGS 132 16 sept. 2015 phi.fa.nhr +#-rw-rwxr-- 1 gpascal FROGS 88 16 sept. 2015 phi.fa.nin +#-rw-rwxr-- 1 gpascal FROGS 1348 16 sept. 2015 phi.fa.nsq +# +#<value> <name> <file_path> +# +#phiX phiX <FROGS-wrappers>/test-data/databases/phiX_db_data/phi.fa