Mercurial > repos > frogs > frogs_core
diff tool-data/frogs_HVL_db.loc.sample @ 0:cd7675c5b15a draft
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 78ca62b54aee22893d278d9c3d495527be405f8a
| author | frogs |
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| date | Wed, 04 Feb 2026 13:15:55 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/frogs_HVL_db.loc.sample Wed Feb 04 13:15:55 2026 +0000 @@ -0,0 +1,40 @@ +# Copyright (C) 2014 INRA +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 3 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. +# +# +#This is a sample file that enables tools FROGS_affiliations_postprocess to solve +#inclusive amplicon sequence by selecting the smallest reference among multihit +#You will need to create or download exact amplicon sequence reference fasta file +# +#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/HVL_reference +# +#Finally you will need to create HVL_db.loc file similar to this one in your galaxy +#tool-data directory.The HVL_db.loc file has this format (longer white space characters are +#TAB characters): +# +#<unique_database_name> <name> <file_path> +# +#First column will be the visible name in galaxy. +# +# +# EXAMPLE FOR TEST : +#Unite_extract_ITS1_test Unite_extract_ITS1_test <Galaxy_dir>/database/shed_tools/toolshed.g2.bx.psu.edu/repos/frogs/frogs/XXXXXX/frogs/test-data/databases/HVL_db_data/Unite_extract_ITS1.fasta +# +# +# +# PRODUCTION FILES, with FROGS toolsheds path to adapt (Galaxy_dir and XXXXXX) +# +#UNITE_7.1_ITS1 UNITE 7.1 ITS1 <Galaxy_dir>/database/shed_tools/toolshed.g2.bx.psu.edu/repos/frogs/frogs/XXXXXX/frogs/tool-data/Unite_s_7.1_20112016_ITS1.fasta +#UNITE_7.1_ITS2 UNITE 7.1 ITS2 <Galaxy_dir>/database/shed_tools/toolshed.g2.bx.psu.edu/repos/frogs/frogs/XXXXXX/frogs/tool-data/Unite_s_7.1_20112016_ITS2.fasta