view cluster_asv_report_macros.xml @ 2:76ff9af5c0a3 draft default tip

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 0e987ae3594883fb3b12d2999c6ad7fccd0b1b64

<?xml version="1.0"?>
<macros>
    <token name="@CLUSTER_ASV_REPORT_CMD_LINE@">
        cluster_asv_report.py
            --input-biom '$input_biom'
            #if $hierarchical_clustering == "yes"
            --hierarchical-clustering
            #end if
            
            --html '$html'
    </token>

    <xml name="cluster_asv_report_inputs">
        <!-- Files -->
        <param argument="--input-biom" type="data" format="biom1" label="Abundance file (format: BIOM)" help="The abundance file to filter." />
            <!-- Parameter -->
        <param argument="--hierarchical-clustering" type="select" display="radio" label="Perform sample hierarchical clustering" help="Enables a sample hierarchical clustering (based on Bray Curtis distance and average linkage function) but with an increased computational cost.">
            <option value="yes" >Yes</option>
            <option value="no" selected="true" >No</option>
		</param>
    </xml>

    <!-- Test -->
    <xml name="cluster_asv_report_test_input">
        <param name="input_biom" value="references/09-normalisation.biom" />
    </xml>
    
    <xml name="cluster_asv_report_test_output">
        <output name="html" file="references/10-clusters-asv-report.html" compare="diff" lines_diff="0" />
    </xml>     

</macros>