Mercurial > repos > frogs > frogs_core

# Copyright (C) 2014 INRA
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
#
#This is a sample file that enables tools FROGS_affiliations_postprocess to solve
#inclusive amplicon sequence by selecting the smallest reference among multihit
#You will need to create or download exact amplicon sequence reference fasta file
#
#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/HVL_reference
#
#Finally you will need to create HVL_db.loc file similar to this one in your galaxy
#tool-data directory.The HVL_db.loc file has this format (longer white space characters are
#TAB characters):
#
#<unique_database_name>    <name>    <file_path>
#
#First column will be the visible name in galaxy.
#
#
# EXAMPLE FOR TEST :
#Unite_extract_ITS1_test	Unite_extract_ITS1_test	<Galaxy_dir>/database/shed_tools/toolshed.g2.bx.psu.edu/repos/frogs/frogs/XXXXXX/frogs/test-data/databases/HVL_db_data/Unite_extract_ITS1.fasta
#
#
#
# PRODUCTION FILES, with FROGS toolsheds path to adapt (Galaxy_dir and XXXXXX)
#
#UNITE_7.1_ITS1	UNITE 7.1 ITS1	<Galaxy_dir>/database/shed_tools/toolshed.g2.bx.psu.edu/repos/frogs/frogs/XXXXXX/frogs/tool-data/Unite_s_7.1_20112016_ITS1.fasta
#UNITE_7.1_ITS2	UNITE 7.1 ITS2	<Galaxy_dir>/database/shed_tools/toolshed.g2.bx.psu.edu/repos/frogs/frogs/XXXXXX/frogs/tool-data/Unite_s_7.1_20112016_ITS2.fasta
author	frogs
date	Fri, 06 Feb 2026 22:05:51 +0000
parents	cd7675c5b15a
children