comparison test-data/databases/frogs_picrust2_placeseqs.loc @ 0:c5fd7b97c2a4 draft default tip

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 78ca62b54aee22893d278d9c3d495527be405f8a

0:c5fd7b97c2a4

# Copyright (C) 2022 INRA
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
#
#This is a sample file that enables tools FROGS_frogsfunc_placeseqs to place 
#studies sequences (i.e. OTUs) into a reference tree.
#
#PICRUSt2 files are present in the arborescence of PICRUSt2. Please consult 
#PICRUSt2 documentation to find out where they are located in your environment.
#
#If you are not comfortable with picrust2 command lines, just create .loc files 
#with EXAMPLE FOR TEST files remembering to replace <PATH_TO> with the real path.
#
#<value>	<name_as_marker_gene>	<path_to_default_dir> <path_to_marker_copy_numbers> <placement_tool>	<version>
#
#default dir must contain these files:
#
#-rw-rw-r-- 1 vdarbot vdarbot 31922081 avril  1  2021 pro_ref.fna
#-rwxrwxr-x 1 vdarbot vdarbot   272826 avril  1  2021 pro_ref.hmm
#-rwxrwxr-x 1 vdarbot vdarbot      116 avril  1  2021 pro_ref.model
#-rwxrwxr-x 1 vdarbot vdarbot     1707 avril  1  2021 pro_ref.raxml_info
#-rwxrwxr-x 1 vdarbot vdarbot   600048 avril  1  2021 pro_ref.tre
#
# EXAMPLE FOR TEST :
picrust2_default_dir_16S	16S	${__HERE__}/frogs_picrust2_db/prokaryotic/pro_ref/	${__HERE__}/frogs_picrust2_db/prokaryiotic/16S_counts.txt.gz	sepp	2.5.1