Mercurial > repos > frogs > frogs_func
diff test-data/databases/frogs_picrust2_pathways.loc @ 0:c5fd7b97c2a4 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 78ca62b54aee22893d278d9c3d495527be405f8a
| author | frogs |
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| date | Wed, 04 Feb 2026 13:17:34 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/databases/frogs_picrust2_pathways.loc Wed Feb 04 13:17:34 2026 +0000 @@ -0,0 +1,32 @@ +# Copyright (C) 2022 INRA +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 3 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. +# +# +#This is a sample file that enables tools FROGS_frogsfunc_pathways to map pathways to reactions. +#The default mapfile maps MetaCyc reactions to prokaryotic MetaCyc pathways. +# +#PICRUSt2 files are present in the arborescence of PICRUSt2. Please consult +#PICRUSt2 documentation to find out where they are located in your environment. +# +#If you are not comfortable with picrust2 command lines, just create .loc files +#with EXAMPLE FOR TEST files remembering to replace <PATH_TO> with the real path. +# +#<db_id> <db_name> <marker_gene> <path_to_mapfiles> <version> +# +#First column will be the visible name in galaxy. +# +# +# EXAMPLE FOR TEST : +pro_metacyc_pathway Metacyc 16S ${__HERE__}/frogs_picrust2_db/pathway_mapfiles/metacyc_path2rxn_struc_filt_pro.txt 2.5.1
