Mercurial > repos > frogs > frogs_func
diff test-data/input/frogsfunc.biom @ 0:c5fd7b97c2a4 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 78ca62b54aee22893d278d9c3d495527be405f8a
| author | frogs |
|---|---|
| date | Wed, 04 Feb 2026 13:17:34 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input/frogsfunc.biom Wed Feb 04 13:17:34 2026 +0000 @@ -0,0 +1,1 @@ +{"id": null, "format": "Biological Observation Matrix 1.0.0", "format_url": "http://biom-format.org", "type": "OTU table", "generated_by": "swarm", "date": "2018-10-04T16:37:49", "rows": [{"id": "Cluster_1", "metadata": {"blast_taxonomy": ["Bacteria", "Firmicutes", "Clostridia", "Oscillospirales", "Oscillospiraceae", "Oscillibacter", "unknown species"], "seed_id": "M02944:219:000000000-B6TML:1:1102:9099:12653", "blast_affiliations": [{"perc_identity": 100.0, "taxonomy": ["Bacteria", "Firmicutes", "Clostridia", "Oscillospirales", "Oscillospiraceae", "Oscillibacter", "unknown species"], "evalue": "0.0", "aln_length": 403, "perc_query_coverage": 100.0, "subject": "HQ785790.1.1449"}]}}, {"id": "Cluster_2", "metadata": {"blast_taxonomy": ["Bacteria", "Proteobacteria", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia-Shigella", "Multi-affiliation"], "seed_id": "M02944:219:000000000-B6TML:1:1102:5178:4304", "blast_affiliations": [{"perc_identity": 100.0, "taxonomy": ["Bacteria", "Proteobacteria", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia-Shigella", "Escherichia coli"], "evalue": "0.0", "aln_length": 426, "perc_query_coverage": 100.0, "subject": "LXJJ02000010.3161.4631"}, {"perc_identity": 100.0, "taxonomy": ["Bacteria", "Proteobacteria", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia-Shigella", "Escherichia coli S88"], "evalue": "0.0", "aln_length": 426, "perc_query_coverage": 100.0, "subject": "CU928161.4443202.4444743"}, {"perc_identity": 100.0, "taxonomy": ["Bacteria", "Proteobacteria", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia-Shigella", "Escherichia coli"], "evalue": "0.0", "aln_length": 426, "perc_query_coverage": 100.0, "subject": "CU651637.2709763.2711303"}, {"perc_identity": 100.0, "taxonomy": ["Bacteria", "Proteobacteria", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia-Shigella", "Escherichia coli O157:H7"], "evalue": "0.0", "aln_length": 426, "perc_query_coverage": 100.0, "subject": "CP033605.4932246.4933797"}, {"perc_identity": 100.0, "taxonomy": ["Bacteria", "Proteobacteria", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia-Shigella", "Shigella flexneri"], "evalue": "0.0", "aln_length": 426, "perc_query_coverage": 100.0, "subject": "CP033510.2312050.2313603"}, {"perc_identity": 100.0, "taxonomy": ["Bacteria", "Proteobacteria", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia-Shigella", "Escherichia coli O32:H37 str. 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