Mercurial > repos > frogs > frogs_func
diff test-data/databases/frogs_picrust2_placeseqs.loc @ 0:c5fd7b97c2a4 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 78ca62b54aee22893d278d9c3d495527be405f8a
| author | frogs |
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| date | Wed, 04 Feb 2026 13:17:34 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/databases/frogs_picrust2_placeseqs.loc Wed Feb 04 13:17:34 2026 +0000 @@ -0,0 +1,37 @@ +# Copyright (C) 2022 INRA +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 3 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. +# +# +#This is a sample file that enables tools FROGS_frogsfunc_placeseqs to place +#studies sequences (i.e. OTUs) into a reference tree. +# +#PICRUSt2 files are present in the arborescence of PICRUSt2. Please consult +#PICRUSt2 documentation to find out where they are located in your environment. +# +#If you are not comfortable with picrust2 command lines, just create .loc files +#with EXAMPLE FOR TEST files remembering to replace <PATH_TO> with the real path. +# +#<value> <name_as_marker_gene> <path_to_default_dir> <path_to_marker_copy_numbers> <placement_tool> <version> +# +#default dir must contain these files: +# +#-rw-rw-r-- 1 vdarbot vdarbot 31922081 avril 1 2021 pro_ref.fna +#-rwxrwxr-x 1 vdarbot vdarbot 272826 avril 1 2021 pro_ref.hmm +#-rwxrwxr-x 1 vdarbot vdarbot 116 avril 1 2021 pro_ref.model +#-rwxrwxr-x 1 vdarbot vdarbot 1707 avril 1 2021 pro_ref.raxml_info +#-rwxrwxr-x 1 vdarbot vdarbot 600048 avril 1 2021 pro_ref.tre +# +# EXAMPLE FOR TEST : +picrust2_default_dir_16S 16S ${__HERE__}/frogs_picrust2_db/prokaryotic/pro_ref/ ${__HERE__}/frogs_picrust2_db/prokaryiotic/16S_counts.txt.gz sepp 2.5.1 \ No newline at end of file