view tool-data/frogs_picrust2_placeseqs.loc.sample @ 0:c5fd7b97c2a4 draft default tip

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 78ca62b54aee22893d278d9c3d495527be405f8a

# Copyright (C) 2022 INRA
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
#
#This is a sample file that enables tools FROGS_frogsfunc_placeseqs to place 
#studies sequences (i.e. OTUs) into a reference tree.
#
#PICRUSt2 files are present in the arborescence of PICRUSt2. Please consult 
#PICRUSt2 documentation to find out where they are located in your environment.
#
#If you are not comfortable with picrust2 command lines, just create .loc files 
#with EXAMPLE FOR TEST files remembering to replace <Galaxy_dir> with the real path.
#
#The indicated path is the one if you do not change the default galaxy config of conda directory.
#
#<identifier>	<marker_gene>	<path_to_picrust_dir> <path_to_marker_copy_numbers> <placement_tool>	<picrust_version>
#
#default dir must contain these files:
#
# XX.fna
# XX.hmm
# XX.model
# XX.tre
# XX.raxml_info # optional
#
# EXAMPLE FOR TEST :
#picrust2_default_dir_16S	16S	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/prokaryotic/pro_ref/	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/16S_counts.txt.gz	epa-ng	2.5.1
#picrust2_default_dir_16S	16S	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/prokaryotic/pro_ref/	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/16S_counts.txt.gz	sepp	2.5.1
#picrust2_default_dir_ITS	ITS	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/fungi/fungi_ITS/	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/fungi/ITS_counts.txt.gz	epa-ng	2.5.1
#picrust2_default_dir_18S	18S	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/fungi/fungi_18S/	<Galaxy_dir>/database/dependencies/_conda/envs/<PICRUSt2_env>/lib/python3.6/site-packages/picrust2/default_files/fungi/18S_counts.txt.gz	epa-ng	2.5.1