Mercurial > repos > fubar > bbgbigwig_dev

annotate test-data/test5.gff3 @ 4:78e7461e8946 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
author fubar
date Fri, 14 Jun 2024 23:46:42 +0000
parents 49c6f715bc82
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
1 ##gff-version 3
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
2 ##date Tue Jun 26 10:48:17 2007
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
3 ##sequence-region ctgA 1 50000
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
4 ##source gbrowse GFFToGalaxyDumper plugin
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
5 ##NOTE: All features dumped.
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
6 ctgA example my_feature 22132 24633 . + . ID=My_feature:f15
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
7 ctgA example my_feature 46990 48410 . - . ID=My_feature:f11
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
8 ctgA example my_feature 44705 47713 . - . ID=My_feature:f01
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
9 ctgA example my_feature 36649 40440 . - . ID=My_feature:f03
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
10 ctgA example my_feature 23072 23185 . + . ID=My_feature:f14
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
11 ctgA example my_feature 37242 38653 . + . ID=My_feature:f04
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
12 ctgA example motif 37497 40559 . - . ID=Motif:m15;Note=7-transmembrane
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
13 ctgA example my_feature 36034 38167 . + . ID=My_feature:f09
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
14 ctgA example motif 28332 30033 . - . ID=Motif:m02;Note=HOX
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
15 ctgA example my_feature 4715 5968 . - . ID=My_feature:f05
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
16 ctgA example motif 48253 48366 . + . ID=Motif:m01;Note=WD40
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
17 ctgA example BAC 1000 20000 . . . ID=BAC:b101.2;Note=Fingerprinted+BAC+with+end+reads
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
18 ctgA example right_end_read 19500 20000 . - . Parent=BAC:b101.2
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
19 ctgA example left_end_read 1000 1500 . + . Parent=BAC:b101.2
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
20 ctgA example motif 13801 14007 . - . ID=Motif:m05;Note=helix+loop+helix
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
21 ctgA example coding 1050 9000 . + . ID=mRNA:EDEN.1;Gene=EDEN
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
22 ctgA example CDS 1201 1500 . + 0 Parent=mRNA:EDEN.1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
23 ctgA example CDS 3000 3902 . + 0 Parent=mRNA:EDEN.1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
24 ctgA example CDS 5000 5500 . + 0 Parent=mRNA:EDEN.1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
25 ctgA example CDS 7000 7608 . + 0 Parent=mRNA:EDEN.1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
26 ctgA example processed_transcript 1050 9000 . + . ID=mRNA:EDEN.1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
27 ctgA example 5'-UTR 1050 1200 . + . Parent=mRNA:EDEN.1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
28 ctgA example 3'-UTR 7609 9000 . + . Parent=mRNA:EDEN.1
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
29 ctgA est match 5410 7503 . - . ID=EST:agt830.3;Target=agt830.3+1+595
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
30 ctgA est HSP 7000 7503 . - . Parent=EST:agt830.3;Target=agt830.3+1+504
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
31 ctgA est HSP 5410 5500 . - . Parent=EST:agt830.3;Target=agt830.3+505+595
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
32 ctgA example motif 46012 48851 . + . ID=Motif:m09;Note=kinase
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
33 ctgA example match 6885 8999 . - . ID=Match:seg03
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
34 ctgA example HSP 8306 8999 . - . Parent=Match:seg03
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
35 ctgA example HSP 8055 8080 . - . Parent=Match:seg03
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
36 ctgA example HSP 7410 7737 . - . Parent=Match:seg03
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
37 ctgA example HSP 6885 7241 . - . Parent=Match:seg03
49c6f715bc82 planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/
fubar
parents:
diff changeset
38 ctgA example my_feature 13280 16394 . + . ID=My_feature:f08