Mercurial > repos > fubar > bbgbigwig_dev
comparison bbgbigwig/test-data/test5.gff3 @ 0:4eadb56fa314 draft
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| author | fubar |
|---|---|
| date | Fri, 14 Jun 2024 06:06:45 +0000 |
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| children |
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| -1:000000000000 | 0:4eadb56fa314 |
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| 1 ##gff-version 3 | |
| 2 ##date Tue Jun 26 10:48:17 2007 | |
| 3 ##sequence-region ctgA 1 50000 | |
| 4 ##source gbrowse GFFToGalaxyDumper plugin | |
| 5 ##NOTE: All features dumped. | |
| 6 ctgA example my_feature 22132 24633 . + . ID=My_feature:f15 | |
| 7 ctgA example my_feature 46990 48410 . - . ID=My_feature:f11 | |
| 8 ctgA example my_feature 44705 47713 . - . ID=My_feature:f01 | |
| 9 ctgA example my_feature 36649 40440 . - . ID=My_feature:f03 | |
| 10 ctgA example my_feature 23072 23185 . + . ID=My_feature:f14 | |
| 11 ctgA example my_feature 37242 38653 . + . ID=My_feature:f04 | |
| 12 ctgA example motif 37497 40559 . - . ID=Motif:m15;Note=7-transmembrane | |
| 13 ctgA example my_feature 36034 38167 . + . ID=My_feature:f09 | |
| 14 ctgA example motif 28332 30033 . - . ID=Motif:m02;Note=HOX | |
| 15 ctgA example my_feature 4715 5968 . - . ID=My_feature:f05 | |
| 16 ctgA example motif 48253 48366 . + . ID=Motif:m01;Note=WD40 | |
| 17 ctgA example BAC 1000 20000 . . . ID=BAC:b101.2;Note=Fingerprinted+BAC+with+end+reads | |
| 18 ctgA example right_end_read 19500 20000 . - . Parent=BAC:b101.2 | |
| 19 ctgA example left_end_read 1000 1500 . + . Parent=BAC:b101.2 | |
| 20 ctgA example motif 13801 14007 . - . ID=Motif:m05;Note=helix+loop+helix | |
| 21 ctgA example coding 1050 9000 . + . ID=mRNA:EDEN.1;Gene=EDEN | |
| 22 ctgA example CDS 1201 1500 . + 0 Parent=mRNA:EDEN.1 | |
| 23 ctgA example CDS 3000 3902 . + 0 Parent=mRNA:EDEN.1 | |
| 24 ctgA example CDS 5000 5500 . + 0 Parent=mRNA:EDEN.1 | |
| 25 ctgA example CDS 7000 7608 . + 0 Parent=mRNA:EDEN.1 | |
| 26 ctgA example processed_transcript 1050 9000 . + . ID=mRNA:EDEN.1 | |
| 27 ctgA example 5'-UTR 1050 1200 . + . Parent=mRNA:EDEN.1 | |
| 28 ctgA example 3'-UTR 7609 9000 . + . Parent=mRNA:EDEN.1 | |
| 29 ctgA est match 5410 7503 . - . ID=EST:agt830.3;Target=agt830.3+1+595 | |
| 30 ctgA est HSP 7000 7503 . - . Parent=EST:agt830.3;Target=agt830.3+1+504 | |
| 31 ctgA est HSP 5410 5500 . - . Parent=EST:agt830.3;Target=agt830.3+505+595 | |
| 32 ctgA example motif 46012 48851 . + . ID=Motif:m09;Note=kinase | |
| 33 ctgA example match 6885 8999 . - . ID=Match:seg03 | |
| 34 ctgA example HSP 8306 8999 . - . Parent=Match:seg03 | |
| 35 ctgA example HSP 8055 8080 . - . Parent=Match:seg03 | |
| 36 ctgA example HSP 7410 7737 . - . Parent=Match:seg03 | |
| 37 ctgA example HSP 6885 7241 . - . Parent=Match:seg03 | |
| 38 ctgA example my_feature 13280 16394 . + . ID=My_feature:f08 |