Mercurial > repos > fubar > bbgbigwig_dev
diff bbgbigwig/test-data/test5.gff3 @ 0:4eadb56fa314 draft
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| author | fubar |
|---|---|
| date | Fri, 14 Jun 2024 06:06:45 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bbgbigwig/test-data/test5.gff3 Fri Jun 14 06:06:45 2024 +0000 @@ -0,0 +1,38 @@ +##gff-version 3 +##date Tue Jun 26 10:48:17 2007 +##sequence-region ctgA 1 50000 +##source gbrowse GFFToGalaxyDumper plugin +##NOTE: All features dumped. +ctgA example my_feature 22132 24633 . + . ID=My_feature:f15 +ctgA example my_feature 46990 48410 . - . ID=My_feature:f11 +ctgA example my_feature 44705 47713 . - . ID=My_feature:f01 +ctgA example my_feature 36649 40440 . - . ID=My_feature:f03 +ctgA example my_feature 23072 23185 . + . ID=My_feature:f14 +ctgA example my_feature 37242 38653 . + . ID=My_feature:f04 +ctgA example motif 37497 40559 . - . ID=Motif:m15;Note=7-transmembrane +ctgA example my_feature 36034 38167 . + . ID=My_feature:f09 +ctgA example motif 28332 30033 . - . ID=Motif:m02;Note=HOX +ctgA example my_feature 4715 5968 . - . ID=My_feature:f05 +ctgA example motif 48253 48366 . + . ID=Motif:m01;Note=WD40 +ctgA example BAC 1000 20000 . . . ID=BAC:b101.2;Note=Fingerprinted+BAC+with+end+reads +ctgA example right_end_read 19500 20000 . - . Parent=BAC:b101.2 +ctgA example left_end_read 1000 1500 . + . Parent=BAC:b101.2 +ctgA example motif 13801 14007 . - . ID=Motif:m05;Note=helix+loop+helix +ctgA example coding 1050 9000 . + . ID=mRNA:EDEN.1;Gene=EDEN +ctgA example CDS 1201 1500 . + 0 Parent=mRNA:EDEN.1 +ctgA example CDS 3000 3902 . + 0 Parent=mRNA:EDEN.1 +ctgA example CDS 5000 5500 . + 0 Parent=mRNA:EDEN.1 +ctgA example CDS 7000 7608 . + 0 Parent=mRNA:EDEN.1 +ctgA example processed_transcript 1050 9000 . + . ID=mRNA:EDEN.1 +ctgA example 5'-UTR 1050 1200 . + . Parent=mRNA:EDEN.1 +ctgA example 3'-UTR 7609 9000 . + . Parent=mRNA:EDEN.1 +ctgA est match 5410 7503 . - . ID=EST:agt830.3;Target=agt830.3+1+595 +ctgA est HSP 7000 7503 . - . Parent=EST:agt830.3;Target=agt830.3+1+504 +ctgA est HSP 5410 5500 . - . Parent=EST:agt830.3;Target=agt830.3+505+595 +ctgA example motif 46012 48851 . + . ID=Motif:m09;Note=kinase +ctgA example match 6885 8999 . - . ID=Match:seg03 +ctgA example HSP 8306 8999 . - . Parent=Match:seg03 +ctgA example HSP 8055 8080 . - . Parent=Match:seg03 +ctgA example HSP 7410 7737 . - . Parent=Match:seg03 +ctgA example HSP 6885 7241 . - . Parent=Match:seg03 +ctgA example my_feature 13280 16394 . + . ID=My_feature:f08