# HG changeset patch
# User fubar
# Date 1718408774 0
# Node ID 3899b3091d4a01fae54b0fa9a72ac3a37cf64d2a
# Parent  460f523c8ff43d5304c5338a57d9699ff25bdcd6
planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/

diff -r 460f523c8ff4 -r 3899b3091d4a bam_bed_gff_to_bigwig.xml
--- a/bam_bed_gff_to_bigwig.xml	Fri Jun 14 07:39:23 2024 +0000
+++ b/bam_bed_gff_to_bigwig.xml	Fri Jun 14 23:46:14 2024 +0000
@@ -1,4 +1,7 @@
-<tool id="bbgtobigwig" name="Convert BAM BED GFF to BigWig" version="0.1" profile="22.05"> 
+<tool id="bbgtobigwig_dev" name="BAM BED GFF coverage bigWigs" version="0.1" profile="22.05"> 
+    <xrefs>
+        <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="455">ucsc-bedgraphtobigwig</requirement>
         <requirement type="package" version="2.31.1">bedtools</requirement>
diff -r 460f523c8ff4 -r 3899b3091d4a test-data/dbkeys.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dbkeys.loc.sample	Fri Jun 14 23:46:14 2024 +0000
@@ -0,0 +1,1 @@
+#<dbkey>	<display_name>	<len_file_path>
diff -r 460f523c8ff4 -r 3899b3091d4a tool-data/testing.len
--- a/tool-data/testing.len	Fri Jun 14 07:39:23 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,30 +0,0 @@
-dummy_chr	100000000
-chr1	1000000000
-X	1000000000
-16	1000000000
-ctgA	1000000000
-Merlin	10000000
-super_1	1000000000
-chr1	1000000000
-chr7	2000000000
-chrX	20000000000
-phiX174	100000000
-random_phiX_region_1	100000000
-random_phiX_region_2	100000000
-random_phiX_region_3	100000000
-random_phiX_region_4	100000000
-random_phiX_region_5	100000000
-random_phiX_region_6	100000000
-random_phiX_region_7	100000000
-random_phiX_region_8	100000000
-random_phiX_region_9	100000000
-random_phiX_region_10	100000000
-random_phiX_region_11	100000000
-random_phiX_region_12	100000000
-random_phiX_region_13	100000000
-random_phiX_region_14	100000000
-random_phiX_region_15	100000000
-random_phiX_region_16	100000000
-random_phiX_region_17	100000000
-random_phiX_region_18	100000000
-random_phiX_region_19	100000000
diff -r 460f523c8ff4 -r 3899b3091d4a tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Fri Jun 14 07:39:23 2024 +0000
+++ b/tool_data_table_conf.xml.sample	Fri Jun 14 23:46:14 2024 +0000
@@ -4,4 +4,4 @@
         <columns>value, name, len_path</columns>
         <file path="tool-data/dbkeys.loc" />
     </table>
-</tables>
\ No newline at end of file
+</tables>