Mercurial > repos > fubar > bigwig_outlier_bed
changeset 8:032e930ef6a1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 7eac2f224d3126002edd2c02d1133b23ac1a4881
| author | fubar |
|---|---|
| date | Wed, 24 Jul 2024 09:19:08 +0000 |
| parents | c8e22efcaeda |
| children | |
| files | 1.bed 1.table asciihist.py bigtest.bed bigtest.table bigwig_outlier_bed.py bigwig_outlier_bed.xml foo foo.bed foo.table |
| diffstat | 10 files changed, 4029 insertions(+), 11 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/1.bed Wed Jul 24 09:19:08 2024 +0000 @@ -0,0 +1,1 @@ +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/1.table Wed Jul 24 09:19:08 2024 +0000 @@ -0,0 +1,57 @@ +Descriptive measures +bigwig foo +contig Merlin +n 180929 +mean 6354.313736 +std 9951.749936 +min 0.000000 +max 32767.000000 +qtop 32767.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 110889 +13.00 30 +22.00 10 +26.00 10 +29.00 10 +40.00 10 +43.00 10 +53.00 10 +57.00 10 +60.00 20 +32721.00 10 +32724.00 10 +32726.00 10 +32728.00 10 +32730.00 10 +32731.00 20 +32737.00 10 +32745.00 10 +32766.00 10 +32767.00 10 +Histogram of foo bigwig values +foo_Merlin 1638.35 | 114,349 | ************************************************** +foo_Merlin 3276.70 | 3,650 | * +foo_Merlin 4915.05 | 3,620 | * +foo_Merlin 6553.40 | 3,570 | * +foo_Merlin 8191.75 | 3,570 | * +foo_Merlin 9830.10 | 3,410 | * +foo_Merlin 11468.45 | 3,610 | * +foo_Merlin 13106.80 | 3,170 | * +foo_Merlin 14745.15 | 3,310 | * +foo_Merlin 16383.50 | 3,390 | * +foo_Merlin 18021.85 | 3,270 | * +foo_Merlin 19660.20 | 3,680 | * +foo_Merlin 21298.55 | 3,560 | * +foo_Merlin 22936.90 | 3,490 | * +foo_Merlin 24575.25 | 3,530 | * +foo_Merlin 26213.60 | 3,460 | * +foo_Merlin 27851.95 | 3,470 | * +foo_Merlin 29490.30 | 3,500 | * +foo_Merlin 31128.65 | 3,920 | * +foo_Merlin 32767.00 | 3,400 | * +foo_Merlin ------------ |------------ | +foo_Merlin N= | 180,929 | +foo_Merlin ------------ |------------ | +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/asciihist.py Wed Jul 24 09:19:08 2024 +0000 @@ -0,0 +1,65 @@ +from __future__ import print_function +import numpy as np + + +def asciihist( + it, + bins=10, + minmax=None, + str_tag="", + scale_output=30, + generate_only=False, + print_function=print, + ): + """Create an ASCII histogram from an interable of numbers. + Author: Boris Gorelik boris@gorelik.net. based on http://econpy.googlecode.com/svn/trunk/pytrix/pytrix.py + License: MIT + """ + ret = [] + itarray = np.asanyarray(it) + if minmax == "auto": + minmax = np.percentile(it, [5, 95]) + if minmax[0] == minmax[1]: + # for very ugly distributions + minmax = None + if minmax is not None: + # discard values that are outside minmax range + mn = minmax[0] + mx = minmax[1] + itarray = itarray[itarray >= mn] + itarray = itarray[itarray <= mx] + if itarray.size: + total = len(itarray) + counts, cutoffs = np.histogram(itarray, bins=bins) + cutoffs = cutoffs[1:] + if str_tag: + str_tag = "%s " % str_tag + else: + str_tag = "" + if scale_output is not None: + scaled_counts = counts.astype(float) / counts.sum() * scale_output + else: + scaled_counts = counts + + if minmax is not None: + ret.append("Trimmed to range (%s - %s)" % (str(minmax[0]), str(minmax[1]))) + for cutoff, original_count, scaled_count in zip(cutoffs, counts, scaled_counts): + ret.append( + "{:s}{:>8.2f} |{:<7,d} | {:s}".format( + str_tag, cutoff, original_count, "*" * int(scaled_count) + ) + ) + ret.append("{:s}{:s} |{:s} | {:s}".format(str_tag, "-" * 8, "-" * 7, "-" * 7)) + ret.append("{:s}{:>8s} |{:<7,d}".format(str_tag, "N=", total)) + else: + ret = [] + if not generate_only: + for line in ret: + print_function(line) + ret = "\n".join(ret) + return ret + + +if __name__ == "__main__": + np.random.seed(11) + asciihist(np.random.randn(10000), minmax="auto", str_tag="Normal")
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bigtest.bed Wed Jul 24 09:19:08 2024 +0000 @@ -0,0 +1,74 @@ +chr10_PATERNAL 41474100 41474700 test_364 364 +chr10_PATERNAL 41474900 41475700 test_364 364 +chr10_PATERNAL 41475900 41476000 test_364 364 +chr10_PATERNAL 41476700 41476800 test_364 364 +chr11_PATERNAL 53462100 53463100 test_3949 3949 +chr11_PATERNAL 53463200 53463600 test_3946 3946 +chr12_PATERNAL 34723100 34723900 test_166 166 +chr12_PATERNAL 34724100 34724200 test_165 165 +chr12_PATERNAL 34724300 34724700 test_165 165 +chr12_PATERNAL 34724900 34725000 test_165 165 +chr13_PATERNAL 2539600 2540600 test_810 810 +chr13_PATERNAL 2540700 2541100 test_807 807 +chr14_PATERNAL 5060700 5060800 test_750 750 +chr14_PATERNAL 5062400 5063500 test_753 753 +chr15_PATERNAL 8525600 8526700 test_1460 1460 +chr16_PATERNAL 46957000 46957100 test_214 214 +chr16_PATERNAL 46957200 46957400 test_214 214 +chr16_PATERNAL 46957500 46957700 test_214 214 +chr16_PATERNAL 46959200 46959900 test_216 216 +chr16_PATERNAL 46960300 46960500 test_216 216 +chr17_PATERNAL 44561600 44562300 test_270 270 +chr17_PATERNAL 44563100 44563400 test_271 271 +chr17_PATERNAL 44563500 44563700 test_270 270 +chr18_PATERNAL 16395400 16395900 test_224 224 +chr18_PATERNAL 16396800 16397000 test_224 224 +chr18_PATERNAL 16397100 16397800 test_224 224 +chr19_PATERNAL 25038600 25039700 test_310 310 +chr1_PATERNAL 129127900 129128000 test_771 771 +chr1_PATERNAL 129128700 129128800 test_765 765 +chr1_PATERNAL 129129600 129129800 test_768 768 +chr1_PATERNAL 144699200 144699400 test_766 766 +chr1_PATERNAL 146727200 146727400 test_767 767 +chr1_PATERNAL 146727600 146728600 test_769 769 +chr1_PATERNAL 146729000 146730100 test_765 765 +chr20_PATERNAL 29847700 29847900 test_433 433 +chr20_PATERNAL 29848000 29848500 test_435 435 +chr21_PATERNAL 2594600 2595200 test_875 875 +chr22_PATERNAL 13156800 13156900 test_473 473 +chr22_PATERNAL 13157700 13157800 test_473 473 +chr22_PATERNAL 13161000 13161300 test_474 474 +chr22_PATERNAL 13161600 13161700 test_473 473 +chr22_PATERNAL 13161800 13161900 test_473 473 +chr2_PATERNAL 90842900 90843200 test_312 312 +chr2_PATERNAL 90845300 90846100 test_314 314 +chr2_PATERNAL 90846200 90847700 test_317 317 +chr3_PATERNAL 94920500 94920800 test_234 234 +chr3_PATERNAL 94920900 94921000 test_237 237 +chr3_PATERNAL 94921100 94921900 test_236 236 +chr3_PATERNAL 94922200 94922300 test_234 234 +chr3_PATERNAL 94922500 94923400 test_237 237 +chr3_PATERNAL 94923500 94923800 test_235 235 +chr4_PATERNAL 51223700 51224000 test_392 392 +chr4_PATERNAL 51224200 51226400 test_394 394 +chr5_PATERNAL 188730000 188730700 test_101 101 +chr5_PATERNAL 188731500 188732900 test_101 101 +chr5_PATERNAL 188733900 188734200 test_101 101 +chr5_PATERNAL 188735300 188735400 test_101 101 +chr6_PATERNAL 62960600 62960700 test_151 151 +chr6_PATERNAL 62960900 62962500 test_151 151 +chr6_PATERNAL 62963200 62963600 test_151 151 +chr7_PATERNAL 59991100 59991200 test_158 158 +chr7_PATERNAL 59992600 59993600 test_159 159 +chr7_PATERNAL 59993700 59994200 test_158 158 +chr7_PATERNAL 59994300 59994500 test_158 158 +chr8_PATERNAL 45507700 45507800 test_350 350 +chr8_PATERNAL 45508200 45509800 test_351 351 +chr8_PATERNAL 45510200 45510300 test_350 350 +chr8_PATERNAL 45511300 45511400 test_350 350 +chr9_PATERNAL 52013000 52014200 test_117 117 +chr9_PATERNAL 55972100 55972400 test_115 115 +chrY_PATERNAL 10714100 10714200 test_89 89 +chrY_PATERNAL 10714900 10715600 test_89 89 +chrY_PATERNAL 10715700 10715800 test_89 89 +chrY_PATERNAL 10719800 10720100 test_89 89
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bigtest.table Wed Jul 24 09:19:08 2024 +0000 @@ -0,0 +1,1311 @@ +Descriptive measures +bigwig test +contig chr10_PATERNAL +n 135711693 +mean 12.178164 +std 7.997467 +min 0.000000 +max 365.000000 +qtop 364.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 26700 +1.00 82900 +2.00 261400 +3.00 676993 +4.00 1665500 +5.00 3125700 +6.00 5078000 +7.00 7469000 +8.00 10191700 +9.00 12544600 +355.00 100 +356.00 100 +357.00 300 +358.00 100 +360.00 500 +361.00 300 +362.00 200 +363.00 600 +364.00 900 +365.00 700 +Histogram of bigwig values +chr10_PATERNAL 18.25 | 127,047,593 | ************************************************************************** +chr10_PATERNAL 36.50 | 7,510,000 | **** +chr10_PATERNAL 54.75 | 818,900 | +chr10_PATERNAL 73.00 | 117,200 | +chr10_PATERNAL 91.25 | 51,900 | +chr10_PATERNAL 109.50 | 44,200 | +chr10_PATERNAL 127.75 | 21,600 | +chr10_PATERNAL 146.00 | 17,900 | +chr10_PATERNAL 164.25 | 16,400 | +chr10_PATERNAL 182.50 | 18,600 | +chr10_PATERNAL 200.75 | 5,400 | +chr10_PATERNAL 219.00 | 6,600 | +chr10_PATERNAL 237.25 | 6,200 | +chr10_PATERNAL 255.50 | 3,900 | +chr10_PATERNAL 273.75 | 4,500 | +chr10_PATERNAL 292.00 | 7,100 | +chr10_PATERNAL 310.25 | 3,000 | +chr10_PATERNAL 328.50 | 2,700 | +chr10_PATERNAL 346.75 | 3,500 | +chr10_PATERNAL 365.00 | 4,500 | +chr10_PATERNAL ------------ |------------ | +chr10_PATERNAL N= | 135,711,693 | +chr10_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr11_PATERNAL +n 133990234 +mean 12.930406 +std 46.587502 +min 0.000000 +max 3957.000000 +qtop 3943.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 4600 +1.00 45800 +2.00 206300 +3.00 589934 +4.00 1391000 +5.00 2781400 +6.00 4622300 +7.00 7170300 +8.00 9896400 +9.00 12328300 +3942.00 100 +3943.00 200 +3944.00 200 +3945.00 200 +3948.00 200 +3949.00 100 +3950.00 100 +3952.00 200 +3955.00 100 +3957.00 100 +Histogram of bigwig values +chr11_PATERNAL 197.85 | 133,923,834 | ******************************************************************************* +chr11_PATERNAL 395.70 | 19,700 | +chr11_PATERNAL 593.55 | 4,700 | +chr11_PATERNAL 791.40 | 2,900 | +chr11_PATERNAL 989.25 | 2,700 | +chr11_PATERNAL 1187.10 | 3,300 | +chr11_PATERNAL 1384.95 | 3,500 | +chr11_PATERNAL 1582.80 | 2,300 | +chr11_PATERNAL 1780.65 | 1,500 | +chr11_PATERNAL 1978.50 | 1,600 | +chr11_PATERNAL 2176.35 | 1,300 | +chr11_PATERNAL 2374.20 | 1,500 | +chr11_PATERNAL 2572.05 | 1,600 | +chr11_PATERNAL 2769.90 | 1,800 | +chr11_PATERNAL 2967.75 | 1,900 | +chr11_PATERNAL 3165.60 | 1,800 | +chr11_PATERNAL 3363.45 | 2,300 | +chr11_PATERNAL 3561.30 | 4,100 | +chr11_PATERNAL 3759.15 | 2,700 | +chr11_PATERNAL 3957.00 | 5,200 | +chr11_PATERNAL ------------ |------------ | +chr11_PATERNAL N= | 133,990,234 | +chr11_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr12_PATERNAL +n 133573629 +mean 12.007561 +std 5.741272 +min 0.000000 +max 168.000000 +qtop 165.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 23900 +1.00 55129 +2.00 203600 +3.00 541800 +4.00 1340700 +5.00 2773400 +6.00 4969200 +7.00 7365600 +8.00 9946300 +9.00 12146300 +159.00 700 +160.00 400 +161.00 900 +162.00 700 +163.00 700 +164.00 1000 +165.00 600 +166.00 200 +167.00 300 +168.00 300 +Histogram of bigwig values +chr12_PATERNAL 8.40 | 27,219,629 | **************** +chr12_PATERNAL 16.80 | 91,457,900 | ****************************************************** +chr12_PATERNAL 25.20 | 13,488,000 | ******** +chr12_PATERNAL 33.60 | 598,100 | +chr12_PATERNAL 42.00 | 228,700 | +chr12_PATERNAL 50.40 | 170,800 | +chr12_PATERNAL 58.80 | 108,300 | +chr12_PATERNAL 67.20 | 81,400 | +chr12_PATERNAL 75.60 | 61,400 | +chr12_PATERNAL 84.00 | 38,900 | +chr12_PATERNAL 92.40 | 29,300 | +chr12_PATERNAL 100.80 | 24,600 | +chr12_PATERNAL 109.20 | 19,400 | +chr12_PATERNAL 117.60 | 11,600 | +chr12_PATERNAL 126.00 | 8,300 | +chr12_PATERNAL 134.40 | 6,500 | +chr12_PATERNAL 142.80 | 5,300 | +chr12_PATERNAL 151.20 | 5,200 | +chr12_PATERNAL 159.60 | 5,200 | +chr12_PATERNAL 168.00 | 5,100 | +chr12_PATERNAL ------------ |------------ | +chr12_PATERNAL N= | 133,573,629 | +chr12_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr13_PATERNAL +n 109226285 +mean 14.222991 +std 17.173413 +min 0.000000 +max 812.000000 +qtop 807.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 21600 +1.00 137400 +2.00 292800 +3.00 599400 +4.00 1194600 +5.00 2310085 +6.00 3561700 +7.00 5479700 +8.00 7129500 +9.00 8754700 +803.00 100 +804.00 200 +805.00 100 +806.00 100 +807.00 400 +808.00 100 +809.00 100 +810.00 200 +811.00 300 +812.00 300 +Histogram of bigwig values +chr13_PATERNAL 40.60 | 106,177,585 | ***************************************************************************** +chr13_PATERNAL 81.20 | 2,615,300 | * +chr13_PATERNAL 121.80 | 171,800 | +chr13_PATERNAL 162.40 | 27,600 | +chr13_PATERNAL 203.00 | 61,500 | +chr13_PATERNAL 243.60 | 49,000 | +chr13_PATERNAL 284.20 | 25,000 | +chr13_PATERNAL 324.80 | 29,800 | +chr13_PATERNAL 365.40 | 33,400 | +chr13_PATERNAL 406.00 | 6,400 | +chr13_PATERNAL 446.60 | 2,800 | +chr13_PATERNAL 487.20 | 2,600 | +chr13_PATERNAL 527.80 | 2,500 | +chr13_PATERNAL 568.40 | 3,600 | +chr13_PATERNAL 609.00 | 4,200 | +chr13_PATERNAL 649.60 | 2,500 | +chr13_PATERNAL 690.20 | 2,200 | +chr13_PATERNAL 730.80 | 2,500 | +chr13_PATERNAL 771.40 | 2,300 | +chr13_PATERNAL 812.00 | 3,700 | +chr13_PATERNAL ------------ |------------ | +chr13_PATERNAL N= | 109,226,285 | +chr13_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr14_PATERNAL +n 105800994 +mean 15.612093 +std 20.583081 +min 0.000000 +max 757.000000 +qtop 750.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 1526500 +1.00 123700 +2.00 235600 +3.00 643694 +4.00 1284600 +5.00 2053700 +6.00 3269000 +7.00 4827200 +8.00 6576300 +9.00 8305300 +746.00 600 +747.00 500 +748.00 100 +750.00 200 +751.00 200 +752.00 100 +753.00 200 +755.00 200 +756.00 200 +757.00 100 +Histogram of bigwig values +chr14_PATERNAL 37.85 | 100,007,794 | *************************************************************************** +chr14_PATERNAL 75.70 | 4,388,500 | *** +chr14_PATERNAL 113.55 | 1,111,300 | +chr14_PATERNAL 151.40 | 82,800 | +chr14_PATERNAL 189.25 | 46,200 | +chr14_PATERNAL 227.10 | 19,800 | +chr14_PATERNAL 264.95 | 16,700 | +chr14_PATERNAL 302.80 | 25,300 | +chr14_PATERNAL 340.65 | 28,700 | +chr14_PATERNAL 378.50 | 19,300 | +chr14_PATERNAL 416.35 | 7,200 | +chr14_PATERNAL 454.20 | 3,300 | +chr14_PATERNAL 492.05 | 4,100 | +chr14_PATERNAL 529.90 | 4,200 | +chr14_PATERNAL 567.75 | 4,700 | +chr14_PATERNAL 605.60 | 4,500 | +chr14_PATERNAL 643.45 | 7,000 | +chr14_PATERNAL 681.30 | 5,900 | +chr14_PATERNAL 719.15 | 5,900 | +chr14_PATERNAL 757.00 | 7,800 | +chr14_PATERNAL ------------ |------------ | +chr14_PATERNAL N= | 105,800,994 | +chr14_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr15_PATERNAL +n 96257017 +mean 16.875315 +std 43.025160 +min 0.000000 +max 1463.000000 +qtop 1459.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 2809600 +1.00 119700 +2.00 233200 +3.00 564000 +4.00 909700 +5.00 1760600 +6.00 2964400 +7.00 4601800 +8.00 6406100 +9.00 7666900 +1454.00 900 +1455.00 600 +1456.00 400 +1457.00 500 +1458.00 100 +1459.00 300 +1460.00 300 +1461.00 200 +1462.00 100 +1463.00 200 +Histogram of bigwig values +chr15_PATERNAL 73.15 | 94,525,517 | ****************************************************************************** +chr15_PATERNAL 146.30 | 1,034,700 | +chr15_PATERNAL 219.45 | 298,300 | +chr15_PATERNAL 292.60 | 92,400 | +chr15_PATERNAL 365.75 | 44,200 | +chr15_PATERNAL 438.90 | 33,600 | +chr15_PATERNAL 512.05 | 30,400 | +chr15_PATERNAL 585.20 | 41,400 | +chr15_PATERNAL 658.35 | 30,500 | +chr15_PATERNAL 731.50 | 14,700 | +chr15_PATERNAL 804.65 | 19,900 | +chr15_PATERNAL 877.80 | 23,300 | +chr15_PATERNAL 950.95 | 24,300 | +chr15_PATERNAL 1024.10 | 18,200 | +chr15_PATERNAL 1097.25 | 8,100 | +chr15_PATERNAL 1170.40 | 2,700 | +chr15_PATERNAL 1243.55 | 1,300 | +chr15_PATERNAL 1316.70 | 2,000 | +chr15_PATERNAL 1389.85 | 2,100 | +chr15_PATERNAL 1463.00 | 9,400 | +chr15_PATERNAL ------------ |------------ | +chr15_PATERNAL N= | 96,257,017 | +chr15_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr16_PATERNAL +n 93601116 +mean 14.825197 +std 12.099955 +min 0.000000 +max 217.000000 +qtop 214.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 13600 +1.00 85000 +2.00 196000 +3.00 652600 +4.00 1226100 +5.00 2030600 +6.00 3224200 +7.00 4815500 +8.00 6318200 +9.00 7563900 +208.00 1700 +209.00 1400 +210.00 800 +211.00 400 +212.00 500 +213.00 800 +214.00 500 +215.00 100 +216.00 700 +217.00 100 +Histogram of bigwig values +chr16_PATERNAL 10.85 | 34,382,216 | ***************************** +chr16_PATERNAL 21.70 | 47,596,600 | **************************************** +chr16_PATERNAL 32.55 | 5,901,000 | ***** +chr16_PATERNAL 43.40 | 2,766,400 | ** +chr16_PATERNAL 54.25 | 1,259,400 | * +chr16_PATERNAL 65.10 | 743,600 | +chr16_PATERNAL 75.95 | 375,900 | +chr16_PATERNAL 86.80 | 229,500 | +chr16_PATERNAL 97.65 | 115,000 | +chr16_PATERNAL 108.50 | 56,100 | +chr16_PATERNAL 119.35 | 45,800 | +chr16_PATERNAL 130.20 | 25,900 | +chr16_PATERNAL 141.05 | 16,800 | +chr16_PATERNAL 151.90 | 21,800 | +chr16_PATERNAL 162.75 | 19,200 | +chr16_PATERNAL 173.60 | 11,600 | +chr16_PATERNAL 184.45 | 12,500 | +chr16_PATERNAL 195.30 | 7,200 | +chr16_PATERNAL 206.15 | 6,600 | +chr16_PATERNAL 217.00 | 8,000 | +chr16_PATERNAL ------------ |------------ | +chr16_PATERNAL N= | 93,601,116 | +chr16_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr17_PATERNAL +n 84843465 +mean 12.594189 +std 10.484164 +min 0.000000 +max 272.000000 +qtop 270.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 2300 +1.00 46200 +2.00 213900 +3.00 500000 +4.00 1186700 +5.00 2379565 +6.00 3820700 +7.00 5481900 +8.00 7202200 +9.00 8687300 +262.00 300 +263.00 300 +264.00 500 +265.00 300 +267.00 500 +268.00 200 +269.00 700 +270.00 500 +271.00 600 +272.00 100 +Histogram of bigwig values +chr17_PATERNAL 13.60 | 62,518,865 | ********************************************************** +chr17_PATERNAL 27.20 | 19,389,000 | ****************** +chr17_PATERNAL 40.80 | 1,183,700 | * +chr17_PATERNAL 54.40 | 805,000 | +chr17_PATERNAL 68.00 | 447,400 | +chr17_PATERNAL 81.60 | 143,900 | +chr17_PATERNAL 95.20 | 70,000 | +chr17_PATERNAL 108.80 | 100,700 | +chr17_PATERNAL 122.40 | 56,400 | +chr17_PATERNAL 136.00 | 46,200 | +chr17_PATERNAL 149.60 | 20,400 | +chr17_PATERNAL 163.20 | 15,300 | +chr17_PATERNAL 176.80 | 11,700 | +chr17_PATERNAL 190.40 | 9,500 | +chr17_PATERNAL 204.00 | 5,400 | +chr17_PATERNAL 217.60 | 3,300 | +chr17_PATERNAL 231.20 | 2,800 | +chr17_PATERNAL 244.80 | 4,000 | +chr17_PATERNAL 258.40 | 5,200 | +chr17_PATERNAL 272.00 | 4,700 | +chr17_PATERNAL ------------ |------------ | +chr17_PATERNAL N= | 84,843,465 | +chr17_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr18_PATERNAL +n 80778415 +mean 12.265428 +std 8.164198 +min 0.000000 +max 226.000000 +qtop 224.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 29215 +1.00 87700 +2.00 244500 +3.00 522300 +4.00 1036300 +5.00 1879700 +6.00 2997700 +7.00 4220000 +8.00 5766100 +9.00 7191300 +217.00 700 +218.00 600 +219.00 300 +220.00 900 +221.00 900 +222.00 700 +223.00 300 +224.00 1000 +225.00 300 +226.00 100 +Histogram of bigwig values +chr18_PATERNAL 11.30 | 40,798,115 | **************************************** +chr18_PATERNAL 22.60 | 38,265,500 | ************************************* +chr18_PATERNAL 33.90 | 827,800 | +chr18_PATERNAL 45.20 | 316,200 | +chr18_PATERNAL 56.50 | 184,900 | +chr18_PATERNAL 67.80 | 101,500 | +chr18_PATERNAL 79.10 | 66,400 | +chr18_PATERNAL 90.40 | 48,100 | +chr18_PATERNAL 101.70 | 27,100 | +chr18_PATERNAL 113.00 | 29,800 | +chr18_PATERNAL 124.30 | 28,200 | +chr18_PATERNAL 135.60 | 22,900 | +chr18_PATERNAL 146.90 | 16,700 | +chr18_PATERNAL 158.20 | 6,600 | +chr18_PATERNAL 169.50 | 4,900 | +chr18_PATERNAL 180.80 | 3,100 | +chr18_PATERNAL 192.10 | 5,700 | +chr18_PATERNAL 203.40 | 8,700 | +chr18_PATERNAL 214.70 | 9,000 | +chr18_PATERNAL 226.00 | 7,200 | +chr18_PATERNAL ------------ |------------ | +chr18_PATERNAL N= | 80,778,415 | +chr18_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr19_PATERNAL +n 61355730 +mean 12.218907 +std 14.301096 +min 0.000000 +max 311.000000 +qtop 310.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 40200 +1.00 119100 +2.00 295400 +3.00 771200 +4.00 1549200 +5.00 2631830 +6.00 4017000 +7.00 5309700 +8.00 6160400 +9.00 6677000 +301.00 400 +302.00 100 +304.00 600 +305.00 1200 +306.00 300 +307.00 300 +308.00 400 +309.00 700 +310.00 800 +311.00 300 +Histogram of bigwig values +chr19_PATERNAL 15.55 | 54,063,230 | ********************************************************************** +chr19_PATERNAL 31.10 | 5,386,800 | ******* +chr19_PATERNAL 46.65 | 644,200 | +chr19_PATERNAL 62.20 | 483,200 | +chr19_PATERNAL 77.75 | 256,400 | +chr19_PATERNAL 93.30 | 143,000 | +chr19_PATERNAL 108.85 | 118,100 | +chr19_PATERNAL 124.40 | 56,600 | +chr19_PATERNAL 139.95 | 58,600 | +chr19_PATERNAL 155.50 | 29,500 | +chr19_PATERNAL 171.05 | 19,200 | +chr19_PATERNAL 186.60 | 9,400 | +chr19_PATERNAL 202.15 | 10,200 | +chr19_PATERNAL 217.70 | 10,000 | +chr19_PATERNAL 233.25 | 10,800 | +chr19_PATERNAL 248.80 | 16,500 | +chr19_PATERNAL 264.35 | 22,600 | +chr19_PATERNAL 279.90 | 7,400 | +chr19_PATERNAL 295.45 | 3,900 | +chr19_PATERNAL 311.00 | 6,100 | +chr19_PATERNAL ------------ |------------ | +chr19_PATERNAL N= | 61,355,730 | +chr19_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr1_PATERNAL +n 252060642 +mean 13.362882 +std 15.293486 +min 0.000000 +max 776.000000 +qtop 764.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 52600 +1.00 124100 +2.00 535100 +3.00 1407900 +4.00 3045800 +5.00 5651900 +6.00 9163600 +7.00 13369400 +8.00 17723300 +9.00 21990000 +766.00 500 +767.00 300 +768.00 200 +769.00 200 +770.00 100 +771.00 100 +772.00 100 +773.00 100 +774.00 100 +776.00 200 +Histogram of bigwig values +chr1_PATERNAL 38.80 | 246,981,642 | ****************************************************************************** +chr1_PATERNAL 77.60 | 4,086,800 | * +chr1_PATERNAL 116.40 | 477,200 | +chr1_PATERNAL 155.20 | 170,300 | +chr1_PATERNAL 194.00 | 100,300 | +chr1_PATERNAL 232.80 | 50,300 | +chr1_PATERNAL 271.60 | 41,200 | +chr1_PATERNAL 310.40 | 24,600 | +chr1_PATERNAL 349.20 | 29,700 | +chr1_PATERNAL 388.00 | 17,600 | +chr1_PATERNAL 426.80 | 14,400 | +chr1_PATERNAL 465.60 | 6,300 | +chr1_PATERNAL 504.40 | 8,000 | +chr1_PATERNAL 543.20 | 8,100 | +chr1_PATERNAL 582.00 | 6,600 | +chr1_PATERNAL 620.80 | 4,900 | +chr1_PATERNAL 659.60 | 5,000 | +chr1_PATERNAL 698.40 | 6,800 | +chr1_PATERNAL 737.20 | 7,700 | +chr1_PATERNAL 776.00 | 13,200 | +chr1_PATERNAL ------------ |------------ | +chr1_PATERNAL N= | 252,060,642 | +chr1_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr20_PATERNAL +n 67035426 +mean 12.655181 +std 14.677786 +min 0.000000 +max 438.000000 +qtop 433.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 27600 +1.00 89800 +2.00 180600 +3.00 375700 +4.00 942900 +5.00 1854400 +6.00 2811500 +7.00 4166600 +8.00 5190300 +9.00 6367026 +429.00 200 +430.00 500 +431.00 600 +432.00 300 +433.00 200 +434.00 100 +435.00 100 +436.00 100 +437.00 100 +438.00 100 +Histogram of bigwig values +chr20_PATERNAL 21.90 | 64,750,326 | ***************************************************************************** +chr20_PATERNAL 43.80 | 1,576,400 | * +chr20_PATERNAL 65.70 | 287,100 | +chr20_PATERNAL 87.60 | 128,500 | +chr20_PATERNAL 109.50 | 75,500 | +chr20_PATERNAL 131.40 | 34,300 | +chr20_PATERNAL 153.30 | 25,800 | +chr20_PATERNAL 175.20 | 29,800 | +chr20_PATERNAL 197.10 | 18,400 | +chr20_PATERNAL 219.00 | 11,900 | +chr20_PATERNAL 240.90 | 17,300 | +chr20_PATERNAL 262.80 | 11,900 | +chr20_PATERNAL 284.70 | 16,200 | +chr20_PATERNAL 306.60 | 7,600 | +chr20_PATERNAL 328.50 | 8,000 | +chr20_PATERNAL 350.40 | 8,600 | +chr20_PATERNAL 372.30 | 6,000 | +chr20_PATERNAL 394.20 | 5,600 | +chr20_PATERNAL 416.10 | 11,900 | +chr20_PATERNAL 438.00 | 4,300 | +chr20_PATERNAL ------------ |------------ | +chr20_PATERNAL N= | 67,035,426 | +chr20_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr21_PATERNAL +n 44312601 +mean 16.190900 +std 31.711537 +min 0.000000 +max 878.000000 +qtop 874.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 2315400 +1.00 24501 +2.00 79200 +3.00 231200 +4.00 481600 +5.00 884400 +6.00 1483300 +7.00 2193700 +8.00 2895600 +9.00 3570600 +865.00 200 +866.00 300 +868.00 300 +870.00 100 +871.00 100 +873.00 100 +874.00 200 +875.00 100 +876.00 200 +878.00 100 +Histogram of bigwig values +chr21_PATERNAL 43.90 | 42,542,901 | **************************************************************************** +chr21_PATERNAL 87.80 | 1,432,200 | ** +chr21_PATERNAL 131.70 | 121,000 | +chr21_PATERNAL 175.60 | 64,500 | +chr21_PATERNAL 219.50 | 15,900 | +chr21_PATERNAL 263.40 | 9,800 | +chr21_PATERNAL 307.30 | 10,400 | +chr21_PATERNAL 351.20 | 13,500 | +chr21_PATERNAL 395.10 | 16,700 | +chr21_PATERNAL 439.00 | 26,400 | +chr21_PATERNAL 482.90 | 4,200 | +chr21_PATERNAL 526.80 | 5,000 | +chr21_PATERNAL 570.70 | 6,100 | +chr21_PATERNAL 614.60 | 5,200 | +chr21_PATERNAL 658.50 | 6,100 | +chr21_PATERNAL 702.40 | 5,100 | +chr21_PATERNAL 746.30 | 4,600 | +chr21_PATERNAL 790.20 | 6,500 | +chr21_PATERNAL 834.10 | 9,000 | +chr21_PATERNAL 878.00 | 7,500 | +chr21_PATERNAL ------------ |------------ | +chr21_PATERNAL N= | 44,312,601 | +chr21_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr22_PATERNAL +n 49430498 +mean 15.736557 +std 20.393526 +min 0.000000 +max 475.000000 +qtop 473.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 1112600 +1.00 88800 +2.00 219100 +3.00 513000 +4.00 1046300 +5.00 1682000 +6.00 2596500 +7.00 3218700 +8.00 3656800 +9.00 4193100 +466.00 200 +467.00 400 +468.00 1100 +469.00 500 +470.00 600 +471.00 800 +472.00 500 +473.00 500 +474.00 100 +475.00 100 +Histogram of bigwig values +chr22_PATERNAL 23.75 | 42,970,698 | ********************************************************************* +chr22_PATERNAL 47.50 | 4,120,200 | ****** +chr22_PATERNAL 71.25 | 1,582,600 | ** +chr22_PATERNAL 95.00 | 431,300 | +chr22_PATERNAL 118.75 | 57,500 | +chr22_PATERNAL 142.50 | 40,100 | +chr22_PATERNAL 166.25 | 71,000 | +chr22_PATERNAL 190.00 | 40,600 | +chr22_PATERNAL 213.75 | 28,500 | +chr22_PATERNAL 237.50 | 21,400 | +chr22_PATERNAL 261.25 | 15,600 | +chr22_PATERNAL 285.00 | 17,300 | +chr22_PATERNAL 308.75 | 1,900 | +chr22_PATERNAL 332.50 | 3,200 | +chr22_PATERNAL 356.25 | 4,100 | +chr22_PATERNAL 380.00 | 2,900 | +chr22_PATERNAL 403.75 | 3,100 | +chr22_PATERNAL 427.50 | 4,300 | +chr22_PATERNAL 451.25 | 2,300 | +chr22_PATERNAL 475.00 | 11,900 | +chr22_PATERNAL ------------ |------------ | +chr22_PATERNAL N= | 49,430,498 | +chr22_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr2_PATERNAL +n 241873600 +mean 12.278911 +std 6.179268 +min 0.000000 +max 320.000000 +qtop 312.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 40600 +1.00 76900 +2.00 283000 +3.00 954800 +4.00 2228600 +5.00 4210500 +6.00 7709700 +7.00 12350200 +8.00 16820500 +9.00 21077000 +310.00 300 +311.00 200 +312.00 500 +313.00 400 +315.00 300 +316.00 200 +317.00 300 +318.00 300 +319.00 400 +320.00 200 +Histogram of bigwig values +chr2_PATERNAL 16.00 | 200,436,200 | ****************************************************************** +chr2_PATERNAL 32.00 | 39,564,300 | ************* +chr2_PATERNAL 48.00 | 978,100 | +chr2_PATERNAL 64.00 | 453,800 | +chr2_PATERNAL 80.00 | 237,700 | +chr2_PATERNAL 96.00 | 100,800 | +chr2_PATERNAL 112.00 | 45,700 | +chr2_PATERNAL 128.00 | 5,800 | +chr2_PATERNAL 144.00 | 8,100 | +chr2_PATERNAL 160.00 | 12,200 | +chr2_PATERNAL 176.00 | 5,600 | +chr2_PATERNAL 192.00 | 1,200 | +chr2_PATERNAL 208.00 | 1,300 | +chr2_PATERNAL 224.00 | 1,900 | +chr2_PATERNAL 240.00 | 1,700 | +chr2_PATERNAL 256.00 | 2,800 | +chr2_PATERNAL 272.00 | 4,100 | +chr2_PATERNAL 288.00 | 1,400 | +chr2_PATERNAL 304.00 | 3,300 | +chr2_PATERNAL 320.00 | 7,600 | +chr2_PATERNAL ------------ |------------ | +chr2_PATERNAL N= | 241,873,600 | +chr2_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr3_PATERNAL +n 201513670 +mean 12.416641 +std 7.601923 +min 0.000000 +max 240.000000 +qtop 234.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 16500 +1.00 56000 +2.00 263800 +3.00 609900 +4.00 1749400 +5.00 3689100 +6.00 6749900 +7.00 10691300 +8.00 14744600 +9.00 18182570 +231.00 200 +232.00 400 +233.00 200 +234.00 600 +235.00 400 +236.00 500 +237.00 200 +238.00 300 +239.00 300 +240.00 200 +Histogram of bigwig values +chr3_PATERNAL 12.00 | 98,775,670 | *************************************** +chr3_PATERNAL 24.00 | 98,839,300 | *************************************** +chr3_PATERNAL 36.00 | 1,885,900 | +chr3_PATERNAL 48.00 | 633,700 | +chr3_PATERNAL 60.00 | 388,700 | +chr3_PATERNAL 72.00 | 349,400 | +chr3_PATERNAL 84.00 | 267,100 | +chr3_PATERNAL 96.00 | 98,500 | +chr3_PATERNAL 108.00 | 46,600 | +chr3_PATERNAL 120.00 | 48,100 | +chr3_PATERNAL 132.00 | 45,100 | +chr3_PATERNAL 144.00 | 39,800 | +chr3_PATERNAL 156.00 | 22,700 | +chr3_PATERNAL 168.00 | 24,200 | +chr3_PATERNAL 180.00 | 16,100 | +chr3_PATERNAL 192.00 | 11,100 | +chr3_PATERNAL 204.00 | 9,300 | +chr3_PATERNAL 216.00 | 2,600 | +chr3_PATERNAL 228.00 | 5,600 | +chr3_PATERNAL 240.00 | 4,200 | +chr3_PATERNAL ------------ |------------ | +chr3_PATERNAL N= | 201,513,670 | +chr3_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr4_PATERNAL +n 192384391 +mean 12.397080 +std 8.573510 +min 0.000000 +max 396.000000 +qtop 392.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 18900 +1.00 58100 +2.00 272300 +3.00 729400 +4.00 1713900 +5.00 3632091 +6.00 6105700 +7.00 9376600 +8.00 13419200 +9.00 16981400 +387.00 500 +388.00 300 +389.00 100 +390.00 500 +391.00 600 +392.00 700 +393.00 200 +394.00 500 +395.00 700 +396.00 400 +Histogram of bigwig values +chr4_PATERNAL 19.80 | 184,706,591 | **************************************************************************** +chr4_PATERNAL 39.60 | 6,474,100 | ** +chr4_PATERNAL 59.40 | 506,100 | +chr4_PATERNAL 79.20 | 257,500 | +chr4_PATERNAL 99.00 | 151,600 | +chr4_PATERNAL 118.80 | 109,400 | +chr4_PATERNAL 138.60 | 38,100 | +chr4_PATERNAL 158.40 | 28,800 | +chr4_PATERNAL 178.20 | 39,400 | +chr4_PATERNAL 198.00 | 10,300 | +chr4_PATERNAL 217.80 | 6,700 | +chr4_PATERNAL 237.60 | 13,900 | +chr4_PATERNAL 257.40 | 3,100 | +chr4_PATERNAL 277.20 | 2,800 | +chr4_PATERNAL 297.00 | 3,200 | +chr4_PATERNAL 316.80 | 3,000 | +chr4_PATERNAL 336.60 | 5,200 | +chr4_PATERNAL 356.40 | 7,100 | +chr4_PATERNAL 376.20 | 10,900 | +chr4_PATERNAL 396.00 | 6,600 | +chr4_PATERNAL ------------ |------------ | +chr4_PATERNAL N= | 192,384,391 | +chr4_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr5_PATERNAL +n 188875663 +mean 12.794952 +std 6.129645 +min 0.000000 +max 103.000000 +qtop 101.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 12900 +1.00 66500 +2.00 210900 +3.00 554400 +4.00 1404500 +5.00 3094300 +6.00 5324400 +7.00 8810800 +8.00 12421900 +9.00 16025300 +94.00 1800 +95.00 1900 +96.00 500 +97.00 1900 +98.00 1400 +99.00 2100 +100.00 2400 +101.00 1200 +102.00 1200 +103.00 100 +Histogram of bigwig values +chr5_PATERNAL 5.15 | 5,343,500 | ** +chr5_PATERNAL 10.30 | 61,405,200 | ************************** +chr5_PATERNAL 15.45 | 83,961,063 | *********************************** +chr5_PATERNAL 20.60 | 27,459,600 | *********** +chr5_PATERNAL 25.75 | 5,650,500 | ** +chr5_PATERNAL 30.90 | 1,956,500 | +chr5_PATERNAL 36.05 | 1,209,700 | +chr5_PATERNAL 41.20 | 518,400 | +chr5_PATERNAL 46.35 | 409,000 | +chr5_PATERNAL 51.50 | 191,200 | +chr5_PATERNAL 56.65 | 118,600 | +chr5_PATERNAL 61.80 | 148,200 | +chr5_PATERNAL 66.95 | 203,200 | +chr5_PATERNAL 72.10 | 154,000 | +chr5_PATERNAL 77.25 | 69,300 | +chr5_PATERNAL 82.40 | 26,000 | +chr5_PATERNAL 87.55 | 22,300 | +chr5_PATERNAL 92.70 | 12,900 | +chr5_PATERNAL 97.85 | 8,100 | +chr5_PATERNAL 103.00 | 8,400 | +chr5_PATERNAL ------------ |------------ | +chr5_PATERNAL N= | 188,875,663 | +chr5_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr6_PATERNAL +n 174411946 +mean 12.205399 +std 5.548847 +min 0.000000 +max 153.000000 +qtop 151.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 13600 +1.00 34700 +2.00 160900 +3.00 562400 +4.00 1521200 +5.00 3304200 +6.00 5567800 +7.00 8780600 +8.00 12393600 +9.00 15531000 +144.00 1800 +145.00 900 +146.00 100 +147.00 200 +148.00 400 +149.00 500 +150.00 600 +151.00 1200 +152.00 400 +153.00 500 +Histogram of bigwig values +chr6_PATERNAL 7.65 | 19,945,400 | ********* +chr6_PATERNAL 15.30 | 125,227,046 | ********************************************************* +chr6_PATERNAL 22.95 | 25,705,400 | *********** +chr6_PATERNAL 30.60 | 2,004,300 | +chr6_PATERNAL 38.25 | 555,000 | +chr6_PATERNAL 45.90 | 311,100 | +chr6_PATERNAL 53.55 | 223,700 | +chr6_PATERNAL 61.20 | 144,600 | +chr6_PATERNAL 68.85 | 105,400 | +chr6_PATERNAL 76.50 | 64,200 | +chr6_PATERNAL 84.15 | 24,800 | +chr6_PATERNAL 91.80 | 19,700 | +chr6_PATERNAL 99.45 | 22,600 | +chr6_PATERNAL 107.10 | 17,500 | +chr6_PATERNAL 114.75 | 9,100 | +chr6_PATERNAL 122.40 | 9,300 | +chr6_PATERNAL 130.05 | 2,700 | +chr6_PATERNAL 137.70 | 4,800 | +chr6_PATERNAL 145.35 | 11,400 | +chr6_PATERNAL 153.00 | 3,900 | +chr6_PATERNAL ------------ |------------ | +chr6_PATERNAL N= | 174,411,946 | +chr6_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr7_PATERNAL +n 160104498 +mean 12.137651 +std 5.845794 +min 0.000000 +max 161.000000 +qtop 158.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 12900 +1.00 52000 +2.00 253098 +3.00 710400 +4.00 1773000 +5.00 3325000 +6.00 5700200 +7.00 8999600 +8.00 12270700 +9.00 14832100 +152.00 700 +153.00 900 +154.00 300 +155.00 300 +156.00 200 +157.00 600 +158.00 800 +159.00 500 +160.00 400 +161.00 100 +Histogram of bigwig values +chr7_PATERNAL 8.05 | 33,096,898 | **************** +chr7_PATERNAL 16.10 | 107,200,800 | ***************************************************** +chr7_PATERNAL 24.15 | 16,521,000 | ******** +chr7_PATERNAL 32.20 | 1,779,800 | +chr7_PATERNAL 40.25 | 669,800 | +chr7_PATERNAL 48.30 | 338,300 | +chr7_PATERNAL 56.35 | 174,800 | +chr7_PATERNAL 64.40 | 95,400 | +chr7_PATERNAL 72.45 | 44,400 | +chr7_PATERNAL 80.50 | 44,100 | +chr7_PATERNAL 88.55 | 41,300 | +chr7_PATERNAL 96.60 | 34,300 | +chr7_PATERNAL 104.65 | 27,400 | +chr7_PATERNAL 112.70 | 11,900 | +chr7_PATERNAL 120.75 | 2,600 | +chr7_PATERNAL 128.80 | 3,300 | +chr7_PATERNAL 136.85 | 4,600 | +chr7_PATERNAL 144.90 | 2,600 | +chr7_PATERNAL 152.95 | 7,100 | +chr7_PATERNAL 161.00 | 4,100 | +chr7_PATERNAL ------------ |------------ | +chr7_PATERNAL N= | 160,104,498 | +chr7_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr8_PATERNAL +n 146786846 +mean 12.524363 +std 8.394871 +min 0.000000 +max 354.000000 +qtop 350.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 12300 +1.00 52500 +2.00 202946 +3.00 619300 +4.00 1469100 +5.00 2779200 +6.00 4960500 +7.00 7414900 +8.00 10268800 +9.00 12975400 +345.00 100 +346.00 600 +347.00 1000 +348.00 1100 +349.00 200 +350.00 600 +351.00 600 +352.00 400 +353.00 200 +354.00 100 +Histogram of bigwig values +chr8_PATERNAL 17.70 | 133,798,546 | ************************************************************************ +chr8_PATERNAL 35.40 | 11,507,900 | ****** +chr8_PATERNAL 53.10 | 812,300 | +chr8_PATERNAL 70.80 | 289,100 | +chr8_PATERNAL 88.50 | 112,600 | +chr8_PATERNAL 106.20 | 88,900 | +chr8_PATERNAL 123.90 | 41,300 | +chr8_PATERNAL 141.60 | 25,700 | +chr8_PATERNAL 159.30 | 32,600 | +chr8_PATERNAL 177.00 | 28,200 | +chr8_PATERNAL 194.70 | 6,800 | +chr8_PATERNAL 212.40 | 3,900 | +chr8_PATERNAL 230.10 | 7,900 | +chr8_PATERNAL 247.80 | 6,900 | +chr8_PATERNAL 265.50 | 6,400 | +chr8_PATERNAL 283.20 | 2,100 | +chr8_PATERNAL 300.90 | 2,200 | +chr8_PATERNAL 318.60 | 2,700 | +chr8_PATERNAL 336.30 | 3,700 | +chr8_PATERNAL 354.00 | 7,100 | +chr8_PATERNAL ------------ |------------ | +chr8_PATERNAL N= | 146,786,846 | +chr8_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chr9_PATERNAL +n 131519477 +mean 14.038499 +std 9.058501 +min 0.000000 +max 119.000000 +qtop 115.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 21900 +1.00 66300 +2.00 187000 +3.00 531700 +4.00 1309900 +5.00 2467800 +6.00 4377900 +7.00 6440900 +8.00 8773300 +9.00 11077400 +110.00 1500 +111.00 1100 +112.00 300 +113.00 200 +114.00 400 +115.00 400 +116.00 300 +117.00 300 +118.00 100 +119.00 400 +Histogram of bigwig values +chr9_PATERNAL 5.95 | 4,584,600 | ** +chr9_PATERNAL 11.90 | 55,736,800 | ********************************* +chr9_PATERNAL 17.85 | 49,497,077 | ****************************** +chr9_PATERNAL 23.80 | 10,509,600 | ****** +chr9_PATERNAL 29.75 | 3,605,300 | ** +chr9_PATERNAL 35.70 | 2,408,900 | * +chr9_PATERNAL 41.65 | 1,846,300 | * +chr9_PATERNAL 47.60 | 1,153,900 | +chr9_PATERNAL 53.55 | 853,900 | +chr9_PATERNAL 59.50 | 530,300 | +chr9_PATERNAL 65.45 | 293,400 | +chr9_PATERNAL 71.40 | 184,200 | +chr9_PATERNAL 77.35 | 118,600 | +chr9_PATERNAL 83.30 | 87,200 | +chr9_PATERNAL 89.25 | 41,000 | +chr9_PATERNAL 95.20 | 31,400 | +chr9_PATERNAL 101.15 | 17,700 | +chr9_PATERNAL 107.10 | 10,600 | +chr9_PATERNAL 113.05 | 6,800 | +chr9_PATERNAL 119.00 | 1,900 | +chr9_PATERNAL ------------ |------------ | +chr9_PATERNAL N= | 131,519,477 | +chr9_PATERNAL ------------ |------------ | + +Descriptive measures +bigwig test +contig chrY_PATERNAL +n 62425491 +mean 9.837032 +std 7.818467 +min 0.000000 +max 89.000000 +qtop 89.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 652100 +1.00 1679900 +2.00 3241900 +3.00 4159300 +4.00 4848491 +5.00 4858200 +6.00 4706700 +7.00 4787800 +8.00 4253900 +9.00 3902200 +80.00 1400 +81.00 1300 +82.00 1000 +83.00 3100 +84.00 3100 +85.00 2500 +86.00 1300 +87.00 2000 +88.00 2100 +89.00 1200 +Histogram of bigwig values +chrY_PATERNAL 4.45 | 14,581,691 | ****************** +chrY_PATERNAL 8.90 | 18,606,600 | *********************** +chrY_PATERNAL 13.35 | 15,618,400 | ******************** +chrY_PATERNAL 17.80 | 6,435,300 | ******** +chrY_PATERNAL 22.25 | 3,464,100 | **** +chrY_PATERNAL 26.70 | 1,274,500 | * +chrY_PATERNAL 31.15 | 1,078,800 | * +chrY_PATERNAL 35.60 | 409,400 | +chrY_PATERNAL 40.05 | 359,700 | +chrY_PATERNAL 44.50 | 235,900 | +chrY_PATERNAL 48.95 | 100,900 | +chrY_PATERNAL 53.40 | 54,200 | +chrY_PATERNAL 57.85 | 63,100 | +chrY_PATERNAL 62.30 | 64,500 | +chrY_PATERNAL 66.75 | 24,300 | +chrY_PATERNAL 71.20 | 23,600 | +chrY_PATERNAL 75.65 | 7,000 | +chrY_PATERNAL 80.10 | 5,900 | +chrY_PATERNAL 84.55 | 8,500 | +chrY_PATERNAL 89.00 | 9,100 | +chrY_PATERNAL ------------ |------------ | +chrY_PATERNAL N= | 62,425,491 | +chrY_PATERNAL ------------ |------------ | +
--- a/bigwig_outlier_bed.py Wed Jul 24 08:49:37 2024 +0000 +++ b/bigwig_outlier_bed.py Wed Jul 24 09:19:08 2024 +0000 @@ -214,9 +214,9 @@ first_few = ['%.2f\t%d' % (values[x],counts[x]) for x in range(10)] first_few += ['%.2f\t%d' % (values[x],counts[x]) for x in last10] first_few.insert(0,'First/Last 10 value counts\nValue\tCount') - ha = asciihist(data=bw, bins=20, str_tag=chr) + ha = asciihist(data=bw, bins=20, str_tag='%s_%s' % (bwlabel,chr)) histo = ha.draw() - histo = '\n'.join(first_few) + '\nHistogram of bigwig values\n' + histo + histo = '\n'.join(first_few) + '\nHistogram of %s bigwig values\n' % bwlabel + histo bw = bw[~np.isnan(bw)] # some have NaN if parts of a contig not covered if self.qhi is not None: self.bwtop = np.quantile(bw, self.qhi)
--- a/bigwig_outlier_bed.xml Wed Jul 24 08:49:37 2024 +0000 +++ b/bigwig_outlier_bed.xml Wed Jul 24 09:19:08 2024 +0000 @@ -58,10 +58,12 @@ <param name="bigwig" type="data" optional="false" label="Choose one or more bigwig file(s) to return outlier regions as a bed file" help="If more than one, MUST all use the same reference sequence to be displayable. Feature names will include the bigwig label." format="bigwig" multiple="true"/> <param name="minwin" type="integer" value="10" label="Minimum continuous bases to count as a high or low bed feature" - help="Continuous features as long or longer than this window size will appear as bed features"/> - <param name="qhi" type="float" value="0.99" label="Quantile cutoff for a high region - 0.99 will cut off at or above the 99th percentile" help="Required" optional="false"/> - <param name="qlo" type="float" value="0.01" label="Quantile cutoff for a low region - 0.01 will cut off at or below the 1st percentile." help="Optional" optional="true"/> - <param name="outbeds" type="select" label="Select the required bed file outputs" help="Any combination of the 3 different kinds of bed file output can be made"> + help="Minimum continuous length to count as a bed feature. If windowed bigwig, must be bigger than window size to have any effect"/> + <param name="qhi" type="float" value="0.99999" label="Quantile cutoff for a high region - 0.99999 will cut off at about 1 in 100,000" + help="1 per 100k might be a few thousand features in a 200M chromosome - depends on the distribution - see the table output" optional="false"/> + <param name="qlo" type="float" value="0.00001" label="Quantile cutoff for a low region - 0.01 will cut off at or below the 1st percentile." help="Optional" optional="true"/> + <param name="outbeds" type="select" label="Select the required bed file outputs or none for a bigwig value distribution report" + help="Any combination of the 3 different kinds of bed file output can be made"> <option value="outhilo" selected="true">Make 1 bed output with both low and high regions</option> <option value="outhi">Make 1 bed output with high regions only</option> <option value="outlo">Make 1 bed output with low regions only</option> @@ -75,17 +77,17 @@ </param> </inputs> <outputs> - <data name="bedouthilo" format="bed" label="High_and_low_bed" hidden="false"> + <data name="bedouthilo" format="bed" label="High_and_low_bed"> <filter>outbeds in ["outall", "outhilo"]</filter> </data> - <data name="bedouthi" format="bed" label="High bed" hidden="false"> + <data name="bedouthi" format="bed" label="High bed"> <filter>outbeds in ["outall", "outlohi", "outhi"]</filter> </data> - <data name="bedoutlo" format="bed" label="Low bed" hidden="false"> + <data name="bedoutlo" format="bed" label="Low bed"> <filter>outbeds in ["outall", "outlohi", "outlo"]</filter> </data> - <data name="tableoutfile" format="txt" label="Contig statistics" hidden="false"> - <filter>tableout == "create"</filter> + <data name="tableoutfile" format="txt" label="Contig statistics"> + <filter>tableout == "create" or outbeds == "outtab"</filter> </data> </outputs> <tests>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/foo Wed Jul 24 09:19:08 2024 +0000 @@ -0,0 +1,1105 @@ +bigwig contig n mean std min max qtop qbot +test chr10_PATERNAL 135711693 12.178164 7.997467 0.000000 365.000000 364.00 0.00 +First/Last 10 value counts +Value Count +0.00 26700 +1.00 82900 +2.00 261400 +3.00 676993 +4.00 1665500 +5.00 3125700 +6.00 5078000 +7.00 7469000 +8.00 10191700 +9.00 12544600 +355.00 100 +356.00 100 +357.00 300 +358.00 100 +360.00 500 +361.00 300 +362.00 200 +363.00 600 +364.00 900 +365.00 700 +Histogram of bigwig values +chr10_PATERNAL 18.25 | 127,047,593 | ************************************************************************** +chr10_PATERNAL 36.50 | 7,510,000 | **** +chr10_PATERNAL 54.75 | 818,900 | +chr10_PATERNAL 73.00 | 117,200 | +chr10_PATERNAL 91.25 | 51,900 | +chr10_PATERNAL 109.50 | 44,200 | +chr10_PATERNAL 127.75 | 21,600 | +chr10_PATERNAL 146.00 | 17,900 | +chr10_PATERNAL 164.25 | 16,400 | +chr10_PATERNAL 182.50 | 18,600 | +chr10_PATERNAL 200.75 | 5,400 | +chr10_PATERNAL 219.00 | 6,600 | +chr10_PATERNAL 237.25 | 6,200 | +chr10_PATERNAL 255.50 | 3,900 | +chr10_PATERNAL 273.75 | 4,500 | +chr10_PATERNAL 292.00 | 7,100 | +chr10_PATERNAL 310.25 | 3,000 | +chr10_PATERNAL 328.50 | 2,700 | +chr10_PATERNAL 346.75 | 3,500 | +chr10_PATERNAL 365.00 | 4,500 | +chr10_PATERNAL ------------ |------------ | +chr10_PATERNAL N= | 135,711,693 | +chr10_PATERNAL ------------ |------------ | + +test chr11_PATERNAL 133990234 12.930406 46.587502 0.000000 3957.000000 3943.00 0.00 +First/Last 10 value counts +Value Count +0.00 4600 +1.00 45800 +2.00 206300 +3.00 589934 +4.00 1391000 +5.00 2781400 +6.00 4622300 +7.00 7170300 +8.00 9896400 +9.00 12328300 +3942.00 100 +3943.00 200 +3944.00 200 +3945.00 200 +3948.00 200 +3949.00 100 +3950.00 100 +3952.00 200 +3955.00 100 +3957.00 100 +Histogram of bigwig values +chr11_PATERNAL 197.85 | 133,923,834 | ******************************************************************************* +chr11_PATERNAL 395.70 | 19,700 | +chr11_PATERNAL 593.55 | 4,700 | +chr11_PATERNAL 791.40 | 2,900 | +chr11_PATERNAL 989.25 | 2,700 | +chr11_PATERNAL 1187.10 | 3,300 | +chr11_PATERNAL 1384.95 | 3,500 | +chr11_PATERNAL 1582.80 | 2,300 | +chr11_PATERNAL 1780.65 | 1,500 | +chr11_PATERNAL 1978.50 | 1,600 | +chr11_PATERNAL 2176.35 | 1,300 | +chr11_PATERNAL 2374.20 | 1,500 | +chr11_PATERNAL 2572.05 | 1,600 | +chr11_PATERNAL 2769.90 | 1,800 | +chr11_PATERNAL 2967.75 | 1,900 | +chr11_PATERNAL 3165.60 | 1,800 | +chr11_PATERNAL 3363.45 | 2,300 | +chr11_PATERNAL 3561.30 | 4,100 | +chr11_PATERNAL 3759.15 | 2,700 | +chr11_PATERNAL 3957.00 | 5,200 | +chr11_PATERNAL ------------ |------------ | +chr11_PATERNAL N= | 133,990,234 | +chr11_PATERNAL ------------ |------------ | + +test chr12_PATERNAL 133573629 12.007561 5.741272 0.000000 168.000000 165.00 0.00 +First/Last 10 value counts +Value Count +0.00 23900 +1.00 55129 +2.00 203600 +3.00 541800 +4.00 1340700 +5.00 2773400 +6.00 4969200 +7.00 7365600 +8.00 9946300 +9.00 12146300 +159.00 700 +160.00 400 +161.00 900 +162.00 700 +163.00 700 +164.00 1000 +165.00 600 +166.00 200 +167.00 300 +168.00 300 +Histogram of bigwig values +chr12_PATERNAL 8.40 | 27,219,629 | **************** +chr12_PATERNAL 16.80 | 91,457,900 | ****************************************************** +chr12_PATERNAL 25.20 | 13,488,000 | ******** +chr12_PATERNAL 33.60 | 598,100 | +chr12_PATERNAL 42.00 | 228,700 | +chr12_PATERNAL 50.40 | 170,800 | +chr12_PATERNAL 58.80 | 108,300 | +chr12_PATERNAL 67.20 | 81,400 | +chr12_PATERNAL 75.60 | 61,400 | +chr12_PATERNAL 84.00 | 38,900 | +chr12_PATERNAL 92.40 | 29,300 | +chr12_PATERNAL 100.80 | 24,600 | +chr12_PATERNAL 109.20 | 19,400 | +chr12_PATERNAL 117.60 | 11,600 | +chr12_PATERNAL 126.00 | 8,300 | +chr12_PATERNAL 134.40 | 6,500 | +chr12_PATERNAL 142.80 | 5,300 | +chr12_PATERNAL 151.20 | 5,200 | +chr12_PATERNAL 159.60 | 5,200 | +chr12_PATERNAL 168.00 | 5,100 | +chr12_PATERNAL ------------ |------------ | +chr12_PATERNAL N= | 133,573,629 | +chr12_PATERNAL ------------ |------------ | + +test chr13_PATERNAL 109226285 14.222991 17.173413 0.000000 812.000000 807.00 0.00 +First/Last 10 value counts +Value Count +0.00 21600 +1.00 137400 +2.00 292800 +3.00 599400 +4.00 1194600 +5.00 2310085 +6.00 3561700 +7.00 5479700 +8.00 7129500 +9.00 8754700 +803.00 100 +804.00 200 +805.00 100 +806.00 100 +807.00 400 +808.00 100 +809.00 100 +810.00 200 +811.00 300 +812.00 300 +Histogram of bigwig values +chr13_PATERNAL 40.60 | 106,177,585 | ***************************************************************************** +chr13_PATERNAL 81.20 | 2,615,300 | * +chr13_PATERNAL 121.80 | 171,800 | +chr13_PATERNAL 162.40 | 27,600 | +chr13_PATERNAL 203.00 | 61,500 | +chr13_PATERNAL 243.60 | 49,000 | +chr13_PATERNAL 284.20 | 25,000 | +chr13_PATERNAL 324.80 | 29,800 | +chr13_PATERNAL 365.40 | 33,400 | +chr13_PATERNAL 406.00 | 6,400 | +chr13_PATERNAL 446.60 | 2,800 | +chr13_PATERNAL 487.20 | 2,600 | +chr13_PATERNAL 527.80 | 2,500 | +chr13_PATERNAL 568.40 | 3,600 | +chr13_PATERNAL 609.00 | 4,200 | +chr13_PATERNAL 649.60 | 2,500 | +chr13_PATERNAL 690.20 | 2,200 | +chr13_PATERNAL 730.80 | 2,500 | +chr13_PATERNAL 771.40 | 2,300 | +chr13_PATERNAL 812.00 | 3,700 | +chr13_PATERNAL ------------ |------------ | +chr13_PATERNAL N= | 109,226,285 | +chr13_PATERNAL ------------ |------------ | + +test chr14_PATERNAL 105800994 15.612093 20.583081 0.000000 757.000000 750.00 0.00 +First/Last 10 value counts +Value Count +0.00 1526500 +1.00 123700 +2.00 235600 +3.00 643694 +4.00 1284600 +5.00 2053700 +6.00 3269000 +7.00 4827200 +8.00 6576300 +9.00 8305300 +746.00 600 +747.00 500 +748.00 100 +750.00 200 +751.00 200 +752.00 100 +753.00 200 +755.00 200 +756.00 200 +757.00 100 +Histogram of bigwig values +chr14_PATERNAL 37.85 | 100,007,794 | *************************************************************************** +chr14_PATERNAL 75.70 | 4,388,500 | *** +chr14_PATERNAL 113.55 | 1,111,300 | +chr14_PATERNAL 151.40 | 82,800 | +chr14_PATERNAL 189.25 | 46,200 | +chr14_PATERNAL 227.10 | 19,800 | +chr14_PATERNAL 264.95 | 16,700 | +chr14_PATERNAL 302.80 | 25,300 | +chr14_PATERNAL 340.65 | 28,700 | +chr14_PATERNAL 378.50 | 19,300 | +chr14_PATERNAL 416.35 | 7,200 | +chr14_PATERNAL 454.20 | 3,300 | +chr14_PATERNAL 492.05 | 4,100 | +chr14_PATERNAL 529.90 | 4,200 | +chr14_PATERNAL 567.75 | 4,700 | +chr14_PATERNAL 605.60 | 4,500 | +chr14_PATERNAL 643.45 | 7,000 | +chr14_PATERNAL 681.30 | 5,900 | +chr14_PATERNAL 719.15 | 5,900 | +chr14_PATERNAL 757.00 | 7,800 | +chr14_PATERNAL ------------ |------------ | +chr14_PATERNAL N= | 105,800,994 | +chr14_PATERNAL ------------ |------------ | + +test chr15_PATERNAL 96257017 16.875315 43.025160 0.000000 1463.000000 1459.00 0.00 +First/Last 10 value counts +Value Count +0.00 2809600 +1.00 119700 +2.00 233200 +3.00 564000 +4.00 909700 +5.00 1760600 +6.00 2964400 +7.00 4601800 +8.00 6406100 +9.00 7666900 +1454.00 900 +1455.00 600 +1456.00 400 +1457.00 500 +1458.00 100 +1459.00 300 +1460.00 300 +1461.00 200 +1462.00 100 +1463.00 200 +Histogram of bigwig values +chr15_PATERNAL 73.15 | 94,525,517 | ****************************************************************************** +chr15_PATERNAL 146.30 | 1,034,700 | +chr15_PATERNAL 219.45 | 298,300 | +chr15_PATERNAL 292.60 | 92,400 | +chr15_PATERNAL 365.75 | 44,200 | +chr15_PATERNAL 438.90 | 33,600 | +chr15_PATERNAL 512.05 | 30,400 | +chr15_PATERNAL 585.20 | 41,400 | +chr15_PATERNAL 658.35 | 30,500 | +chr15_PATERNAL 731.50 | 14,700 | +chr15_PATERNAL 804.65 | 19,900 | +chr15_PATERNAL 877.80 | 23,300 | +chr15_PATERNAL 950.95 | 24,300 | +chr15_PATERNAL 1024.10 | 18,200 | +chr15_PATERNAL 1097.25 | 8,100 | +chr15_PATERNAL 1170.40 | 2,700 | +chr15_PATERNAL 1243.55 | 1,300 | +chr15_PATERNAL 1316.70 | 2,000 | +chr15_PATERNAL 1389.85 | 2,100 | +chr15_PATERNAL 1463.00 | 9,400 | +chr15_PATERNAL ------------ |------------ | +chr15_PATERNAL N= | 96,257,017 | +chr15_PATERNAL ------------ |------------ | + +test chr16_PATERNAL 93601116 14.825197 12.099955 0.000000 217.000000 214.00 0.00 +First/Last 10 value counts +Value Count +0.00 13600 +1.00 85000 +2.00 196000 +3.00 652600 +4.00 1226100 +5.00 2030600 +6.00 3224200 +7.00 4815500 +8.00 6318200 +9.00 7563900 +208.00 1700 +209.00 1400 +210.00 800 +211.00 400 +212.00 500 +213.00 800 +214.00 500 +215.00 100 +216.00 700 +217.00 100 +Histogram of bigwig values +chr16_PATERNAL 10.85 | 34,382,216 | ***************************** +chr16_PATERNAL 21.70 | 47,596,600 | **************************************** +chr16_PATERNAL 32.55 | 5,901,000 | ***** +chr16_PATERNAL 43.40 | 2,766,400 | ** +chr16_PATERNAL 54.25 | 1,259,400 | * +chr16_PATERNAL 65.10 | 743,600 | +chr16_PATERNAL 75.95 | 375,900 | +chr16_PATERNAL 86.80 | 229,500 | +chr16_PATERNAL 97.65 | 115,000 | +chr16_PATERNAL 108.50 | 56,100 | +chr16_PATERNAL 119.35 | 45,800 | +chr16_PATERNAL 130.20 | 25,900 | +chr16_PATERNAL 141.05 | 16,800 | +chr16_PATERNAL 151.90 | 21,800 | +chr16_PATERNAL 162.75 | 19,200 | +chr16_PATERNAL 173.60 | 11,600 | +chr16_PATERNAL 184.45 | 12,500 | +chr16_PATERNAL 195.30 | 7,200 | +chr16_PATERNAL 206.15 | 6,600 | +chr16_PATERNAL 217.00 | 8,000 | +chr16_PATERNAL ------------ |------------ | +chr16_PATERNAL N= | 93,601,116 | +chr16_PATERNAL ------------ |------------ | + +test chr17_PATERNAL 84843465 12.594189 10.484164 0.000000 272.000000 270.00 0.00 +First/Last 10 value counts +Value Count +0.00 2300 +1.00 46200 +2.00 213900 +3.00 500000 +4.00 1186700 +5.00 2379565 +6.00 3820700 +7.00 5481900 +8.00 7202200 +9.00 8687300 +262.00 300 +263.00 300 +264.00 500 +265.00 300 +267.00 500 +268.00 200 +269.00 700 +270.00 500 +271.00 600 +272.00 100 +Histogram of bigwig values +chr17_PATERNAL 13.60 | 62,518,865 | ********************************************************** +chr17_PATERNAL 27.20 | 19,389,000 | ****************** +chr17_PATERNAL 40.80 | 1,183,700 | * +chr17_PATERNAL 54.40 | 805,000 | +chr17_PATERNAL 68.00 | 447,400 | +chr17_PATERNAL 81.60 | 143,900 | +chr17_PATERNAL 95.20 | 70,000 | +chr17_PATERNAL 108.80 | 100,700 | +chr17_PATERNAL 122.40 | 56,400 | +chr17_PATERNAL 136.00 | 46,200 | +chr17_PATERNAL 149.60 | 20,400 | +chr17_PATERNAL 163.20 | 15,300 | +chr17_PATERNAL 176.80 | 11,700 | +chr17_PATERNAL 190.40 | 9,500 | +chr17_PATERNAL 204.00 | 5,400 | +chr17_PATERNAL 217.60 | 3,300 | +chr17_PATERNAL 231.20 | 2,800 | +chr17_PATERNAL 244.80 | 4,000 | +chr17_PATERNAL 258.40 | 5,200 | +chr17_PATERNAL 272.00 | 4,700 | +chr17_PATERNAL ------------ |------------ | +chr17_PATERNAL N= | 84,843,465 | +chr17_PATERNAL ------------ |------------ | + +test chr18_PATERNAL 80778415 12.265428 8.164198 0.000000 226.000000 224.00 0.00 +First/Last 10 value counts +Value Count +0.00 29215 +1.00 87700 +2.00 244500 +3.00 522300 +4.00 1036300 +5.00 1879700 +6.00 2997700 +7.00 4220000 +8.00 5766100 +9.00 7191300 +217.00 700 +218.00 600 +219.00 300 +220.00 900 +221.00 900 +222.00 700 +223.00 300 +224.00 1000 +225.00 300 +226.00 100 +Histogram of bigwig values +chr18_PATERNAL 11.30 | 40,798,115 | **************************************** +chr18_PATERNAL 22.60 | 38,265,500 | ************************************* +chr18_PATERNAL 33.90 | 827,800 | +chr18_PATERNAL 45.20 | 316,200 | +chr18_PATERNAL 56.50 | 184,900 | +chr18_PATERNAL 67.80 | 101,500 | +chr18_PATERNAL 79.10 | 66,400 | +chr18_PATERNAL 90.40 | 48,100 | +chr18_PATERNAL 101.70 | 27,100 | +chr18_PATERNAL 113.00 | 29,800 | +chr18_PATERNAL 124.30 | 28,200 | +chr18_PATERNAL 135.60 | 22,900 | +chr18_PATERNAL 146.90 | 16,700 | +chr18_PATERNAL 158.20 | 6,600 | +chr18_PATERNAL 169.50 | 4,900 | +chr18_PATERNAL 180.80 | 3,100 | +chr18_PATERNAL 192.10 | 5,700 | +chr18_PATERNAL 203.40 | 8,700 | +chr18_PATERNAL 214.70 | 9,000 | +chr18_PATERNAL 226.00 | 7,200 | +chr18_PATERNAL ------------ |------------ | +chr18_PATERNAL N= | 80,778,415 | +chr18_PATERNAL ------------ |------------ | + +test chr19_PATERNAL 61355730 12.218907 14.301096 0.000000 311.000000 310.00 0.00 +First/Last 10 value counts +Value Count +0.00 40200 +1.00 119100 +2.00 295400 +3.00 771200 +4.00 1549200 +5.00 2631830 +6.00 4017000 +7.00 5309700 +8.00 6160400 +9.00 6677000 +301.00 400 +302.00 100 +304.00 600 +305.00 1200 +306.00 300 +307.00 300 +308.00 400 +309.00 700 +310.00 800 +311.00 300 +Histogram of bigwig values +chr19_PATERNAL 15.55 | 54,063,230 | ********************************************************************** +chr19_PATERNAL 31.10 | 5,386,800 | ******* +chr19_PATERNAL 46.65 | 644,200 | +chr19_PATERNAL 62.20 | 483,200 | +chr19_PATERNAL 77.75 | 256,400 | +chr19_PATERNAL 93.30 | 143,000 | +chr19_PATERNAL 108.85 | 118,100 | +chr19_PATERNAL 124.40 | 56,600 | +chr19_PATERNAL 139.95 | 58,600 | +chr19_PATERNAL 155.50 | 29,500 | +chr19_PATERNAL 171.05 | 19,200 | +chr19_PATERNAL 186.60 | 9,400 | +chr19_PATERNAL 202.15 | 10,200 | +chr19_PATERNAL 217.70 | 10,000 | +chr19_PATERNAL 233.25 | 10,800 | +chr19_PATERNAL 248.80 | 16,500 | +chr19_PATERNAL 264.35 | 22,600 | +chr19_PATERNAL 279.90 | 7,400 | +chr19_PATERNAL 295.45 | 3,900 | +chr19_PATERNAL 311.00 | 6,100 | +chr19_PATERNAL ------------ |------------ | +chr19_PATERNAL N= | 61,355,730 | +chr19_PATERNAL ------------ |------------ | + +test chr1_PATERNAL 252060642 13.362882 15.293486 0.000000 776.000000 764.00 0.00 +First/Last 10 value counts +Value Count +0.00 52600 +1.00 124100 +2.00 535100 +3.00 1407900 +4.00 3045800 +5.00 5651900 +6.00 9163600 +7.00 13369400 +8.00 17723300 +9.00 21990000 +766.00 500 +767.00 300 +768.00 200 +769.00 200 +770.00 100 +771.00 100 +772.00 100 +773.00 100 +774.00 100 +776.00 200 +Histogram of bigwig values +chr1_PATERNAL 38.80 | 246,981,642 | ****************************************************************************** +chr1_PATERNAL 77.60 | 4,086,800 | * +chr1_PATERNAL 116.40 | 477,200 | +chr1_PATERNAL 155.20 | 170,300 | +chr1_PATERNAL 194.00 | 100,300 | +chr1_PATERNAL 232.80 | 50,300 | +chr1_PATERNAL 271.60 | 41,200 | +chr1_PATERNAL 310.40 | 24,600 | +chr1_PATERNAL 349.20 | 29,700 | +chr1_PATERNAL 388.00 | 17,600 | +chr1_PATERNAL 426.80 | 14,400 | +chr1_PATERNAL 465.60 | 6,300 | +chr1_PATERNAL 504.40 | 8,000 | +chr1_PATERNAL 543.20 | 8,100 | +chr1_PATERNAL 582.00 | 6,600 | +chr1_PATERNAL 620.80 | 4,900 | +chr1_PATERNAL 659.60 | 5,000 | +chr1_PATERNAL 698.40 | 6,800 | +chr1_PATERNAL 737.20 | 7,700 | +chr1_PATERNAL 776.00 | 13,200 | +chr1_PATERNAL ------------ |------------ | +chr1_PATERNAL N= | 252,060,642 | +chr1_PATERNAL ------------ |------------ | + +test chr20_PATERNAL 67035426 12.655181 14.677786 0.000000 438.000000 433.00 0.00 +First/Last 10 value counts +Value Count +0.00 27600 +1.00 89800 +2.00 180600 +3.00 375700 +4.00 942900 +5.00 1854400 +6.00 2811500 +7.00 4166600 +8.00 5190300 +9.00 6367026 +429.00 200 +430.00 500 +431.00 600 +432.00 300 +433.00 200 +434.00 100 +435.00 100 +436.00 100 +437.00 100 +438.00 100 +Histogram of bigwig values +chr20_PATERNAL 21.90 | 64,750,326 | ***************************************************************************** +chr20_PATERNAL 43.80 | 1,576,400 | * +chr20_PATERNAL 65.70 | 287,100 | +chr20_PATERNAL 87.60 | 128,500 | +chr20_PATERNAL 109.50 | 75,500 | +chr20_PATERNAL 131.40 | 34,300 | +chr20_PATERNAL 153.30 | 25,800 | +chr20_PATERNAL 175.20 | 29,800 | +chr20_PATERNAL 197.10 | 18,400 | +chr20_PATERNAL 219.00 | 11,900 | +chr20_PATERNAL 240.90 | 17,300 | +chr20_PATERNAL 262.80 | 11,900 | +chr20_PATERNAL 284.70 | 16,200 | +chr20_PATERNAL 306.60 | 7,600 | +chr20_PATERNAL 328.50 | 8,000 | +chr20_PATERNAL 350.40 | 8,600 | +chr20_PATERNAL 372.30 | 6,000 | +chr20_PATERNAL 394.20 | 5,600 | +chr20_PATERNAL 416.10 | 11,900 | +chr20_PATERNAL 438.00 | 4,300 | +chr20_PATERNAL ------------ |------------ | +chr20_PATERNAL N= | 67,035,426 | +chr20_PATERNAL ------------ |------------ | + +test chr21_PATERNAL 44312601 16.190900 31.711537 0.000000 878.000000 874.00 0.00 +First/Last 10 value counts +Value Count +0.00 2315400 +1.00 24501 +2.00 79200 +3.00 231200 +4.00 481600 +5.00 884400 +6.00 1483300 +7.00 2193700 +8.00 2895600 +9.00 3570600 +865.00 200 +866.00 300 +868.00 300 +870.00 100 +871.00 100 +873.00 100 +874.00 200 +875.00 100 +876.00 200 +878.00 100 +Histogram of bigwig values +chr21_PATERNAL 43.90 | 42,542,901 | **************************************************************************** +chr21_PATERNAL 87.80 | 1,432,200 | ** +chr21_PATERNAL 131.70 | 121,000 | +chr21_PATERNAL 175.60 | 64,500 | +chr21_PATERNAL 219.50 | 15,900 | +chr21_PATERNAL 263.40 | 9,800 | +chr21_PATERNAL 307.30 | 10,400 | +chr21_PATERNAL 351.20 | 13,500 | +chr21_PATERNAL 395.10 | 16,700 | +chr21_PATERNAL 439.00 | 26,400 | +chr21_PATERNAL 482.90 | 4,200 | +chr21_PATERNAL 526.80 | 5,000 | +chr21_PATERNAL 570.70 | 6,100 | +chr21_PATERNAL 614.60 | 5,200 | +chr21_PATERNAL 658.50 | 6,100 | +chr21_PATERNAL 702.40 | 5,100 | +chr21_PATERNAL 746.30 | 4,600 | +chr21_PATERNAL 790.20 | 6,500 | +chr21_PATERNAL 834.10 | 9,000 | +chr21_PATERNAL 878.00 | 7,500 | +chr21_PATERNAL ------------ |------------ | +chr21_PATERNAL N= | 44,312,601 | +chr21_PATERNAL ------------ |------------ | + +test chr22_PATERNAL 49430498 15.736557 20.393526 0.000000 475.000000 473.00 0.00 +First/Last 10 value counts +Value Count +0.00 1112600 +1.00 88800 +2.00 219100 +3.00 513000 +4.00 1046300 +5.00 1682000 +6.00 2596500 +7.00 3218700 +8.00 3656800 +9.00 4193100 +466.00 200 +467.00 400 +468.00 1100 +469.00 500 +470.00 600 +471.00 800 +472.00 500 +473.00 500 +474.00 100 +475.00 100 +Histogram of bigwig values +chr22_PATERNAL 23.75 | 42,970,698 | ********************************************************************* +chr22_PATERNAL 47.50 | 4,120,200 | ****** +chr22_PATERNAL 71.25 | 1,582,600 | ** +chr22_PATERNAL 95.00 | 431,300 | +chr22_PATERNAL 118.75 | 57,500 | +chr22_PATERNAL 142.50 | 40,100 | +chr22_PATERNAL 166.25 | 71,000 | +chr22_PATERNAL 190.00 | 40,600 | +chr22_PATERNAL 213.75 | 28,500 | +chr22_PATERNAL 237.50 | 21,400 | +chr22_PATERNAL 261.25 | 15,600 | +chr22_PATERNAL 285.00 | 17,300 | +chr22_PATERNAL 308.75 | 1,900 | +chr22_PATERNAL 332.50 | 3,200 | +chr22_PATERNAL 356.25 | 4,100 | +chr22_PATERNAL 380.00 | 2,900 | +chr22_PATERNAL 403.75 | 3,100 | +chr22_PATERNAL 427.50 | 4,300 | +chr22_PATERNAL 451.25 | 2,300 | +chr22_PATERNAL 475.00 | 11,900 | +chr22_PATERNAL ------------ |------------ | +chr22_PATERNAL N= | 49,430,498 | +chr22_PATERNAL ------------ |------------ | + +test chr2_PATERNAL 241873600 12.278911 6.179268 0.000000 320.000000 312.00 0.00 +First/Last 10 value counts +Value Count +0.00 40600 +1.00 76900 +2.00 283000 +3.00 954800 +4.00 2228600 +5.00 4210500 +6.00 7709700 +7.00 12350200 +8.00 16820500 +9.00 21077000 +310.00 300 +311.00 200 +312.00 500 +313.00 400 +315.00 300 +316.00 200 +317.00 300 +318.00 300 +319.00 400 +320.00 200 +Histogram of bigwig values +chr2_PATERNAL 16.00 | 200,436,200 | ****************************************************************** +chr2_PATERNAL 32.00 | 39,564,300 | ************* +chr2_PATERNAL 48.00 | 978,100 | +chr2_PATERNAL 64.00 | 453,800 | +chr2_PATERNAL 80.00 | 237,700 | +chr2_PATERNAL 96.00 | 100,800 | +chr2_PATERNAL 112.00 | 45,700 | +chr2_PATERNAL 128.00 | 5,800 | +chr2_PATERNAL 144.00 | 8,100 | +chr2_PATERNAL 160.00 | 12,200 | +chr2_PATERNAL 176.00 | 5,600 | +chr2_PATERNAL 192.00 | 1,200 | +chr2_PATERNAL 208.00 | 1,300 | +chr2_PATERNAL 224.00 | 1,900 | +chr2_PATERNAL 240.00 | 1,700 | +chr2_PATERNAL 256.00 | 2,800 | +chr2_PATERNAL 272.00 | 4,100 | +chr2_PATERNAL 288.00 | 1,400 | +chr2_PATERNAL 304.00 | 3,300 | +chr2_PATERNAL 320.00 | 7,600 | +chr2_PATERNAL ------------ |------------ | +chr2_PATERNAL N= | 241,873,600 | +chr2_PATERNAL ------------ |------------ | + +test chr3_PATERNAL 201513670 12.416641 7.601923 0.000000 240.000000 234.00 0.00 +First/Last 10 value counts +Value Count +0.00 16500 +1.00 56000 +2.00 263800 +3.00 609900 +4.00 1749400 +5.00 3689100 +6.00 6749900 +7.00 10691300 +8.00 14744600 +9.00 18182570 +231.00 200 +232.00 400 +233.00 200 +234.00 600 +235.00 400 +236.00 500 +237.00 200 +238.00 300 +239.00 300 +240.00 200 +Histogram of bigwig values +chr3_PATERNAL 12.00 | 98,775,670 | *************************************** +chr3_PATERNAL 24.00 | 98,839,300 | *************************************** +chr3_PATERNAL 36.00 | 1,885,900 | +chr3_PATERNAL 48.00 | 633,700 | +chr3_PATERNAL 60.00 | 388,700 | +chr3_PATERNAL 72.00 | 349,400 | +chr3_PATERNAL 84.00 | 267,100 | +chr3_PATERNAL 96.00 | 98,500 | +chr3_PATERNAL 108.00 | 46,600 | +chr3_PATERNAL 120.00 | 48,100 | +chr3_PATERNAL 132.00 | 45,100 | +chr3_PATERNAL 144.00 | 39,800 | +chr3_PATERNAL 156.00 | 22,700 | +chr3_PATERNAL 168.00 | 24,200 | +chr3_PATERNAL 180.00 | 16,100 | +chr3_PATERNAL 192.00 | 11,100 | +chr3_PATERNAL 204.00 | 9,300 | +chr3_PATERNAL 216.00 | 2,600 | +chr3_PATERNAL 228.00 | 5,600 | +chr3_PATERNAL 240.00 | 4,200 | +chr3_PATERNAL ------------ |------------ | +chr3_PATERNAL N= | 201,513,670 | +chr3_PATERNAL ------------ |------------ | + +test chr4_PATERNAL 192384391 12.397080 8.573510 0.000000 396.000000 392.00 0.00 +First/Last 10 value counts +Value Count +0.00 18900 +1.00 58100 +2.00 272300 +3.00 729400 +4.00 1713900 +5.00 3632091 +6.00 6105700 +7.00 9376600 +8.00 13419200 +9.00 16981400 +387.00 500 +388.00 300 +389.00 100 +390.00 500 +391.00 600 +392.00 700 +393.00 200 +394.00 500 +395.00 700 +396.00 400 +Histogram of bigwig values +chr4_PATERNAL 19.80 | 184,706,591 | **************************************************************************** +chr4_PATERNAL 39.60 | 6,474,100 | ** +chr4_PATERNAL 59.40 | 506,100 | +chr4_PATERNAL 79.20 | 257,500 | +chr4_PATERNAL 99.00 | 151,600 | +chr4_PATERNAL 118.80 | 109,400 | +chr4_PATERNAL 138.60 | 38,100 | +chr4_PATERNAL 158.40 | 28,800 | +chr4_PATERNAL 178.20 | 39,400 | +chr4_PATERNAL 198.00 | 10,300 | +chr4_PATERNAL 217.80 | 6,700 | +chr4_PATERNAL 237.60 | 13,900 | +chr4_PATERNAL 257.40 | 3,100 | +chr4_PATERNAL 277.20 | 2,800 | +chr4_PATERNAL 297.00 | 3,200 | +chr4_PATERNAL 316.80 | 3,000 | +chr4_PATERNAL 336.60 | 5,200 | +chr4_PATERNAL 356.40 | 7,100 | +chr4_PATERNAL 376.20 | 10,900 | +chr4_PATERNAL 396.00 | 6,600 | +chr4_PATERNAL ------------ |------------ | +chr4_PATERNAL N= | 192,384,391 | +chr4_PATERNAL ------------ |------------ | + +test chr5_PATERNAL 188875663 12.794952 6.129645 0.000000 103.000000 101.00 0.00 +First/Last 10 value counts +Value Count +0.00 12900 +1.00 66500 +2.00 210900 +3.00 554400 +4.00 1404500 +5.00 3094300 +6.00 5324400 +7.00 8810800 +8.00 12421900 +9.00 16025300 +94.00 1800 +95.00 1900 +96.00 500 +97.00 1900 +98.00 1400 +99.00 2100 +100.00 2400 +101.00 1200 +102.00 1200 +103.00 100 +Histogram of bigwig values +chr5_PATERNAL 5.15 | 5,343,500 | ** +chr5_PATERNAL 10.30 | 61,405,200 | ************************** +chr5_PATERNAL 15.45 | 83,961,063 | *********************************** +chr5_PATERNAL 20.60 | 27,459,600 | *********** +chr5_PATERNAL 25.75 | 5,650,500 | ** +chr5_PATERNAL 30.90 | 1,956,500 | +chr5_PATERNAL 36.05 | 1,209,700 | +chr5_PATERNAL 41.20 | 518,400 | +chr5_PATERNAL 46.35 | 409,000 | +chr5_PATERNAL 51.50 | 191,200 | +chr5_PATERNAL 56.65 | 118,600 | +chr5_PATERNAL 61.80 | 148,200 | +chr5_PATERNAL 66.95 | 203,200 | +chr5_PATERNAL 72.10 | 154,000 | +chr5_PATERNAL 77.25 | 69,300 | +chr5_PATERNAL 82.40 | 26,000 | +chr5_PATERNAL 87.55 | 22,300 | +chr5_PATERNAL 92.70 | 12,900 | +chr5_PATERNAL 97.85 | 8,100 | +chr5_PATERNAL 103.00 | 8,400 | +chr5_PATERNAL ------------ |------------ | +chr5_PATERNAL N= | 188,875,663 | +chr5_PATERNAL ------------ |------------ | + +test chr6_PATERNAL 174411946 12.205399 5.548847 0.000000 153.000000 151.00 0.00 +First/Last 10 value counts +Value Count +0.00 13600 +1.00 34700 +2.00 160900 +3.00 562400 +4.00 1521200 +5.00 3304200 +6.00 5567800 +7.00 8780600 +8.00 12393600 +9.00 15531000 +144.00 1800 +145.00 900 +146.00 100 +147.00 200 +148.00 400 +149.00 500 +150.00 600 +151.00 1200 +152.00 400 +153.00 500 +Histogram of bigwig values +chr6_PATERNAL 7.65 | 19,945,400 | ********* +chr6_PATERNAL 15.30 | 125,227,046 | ********************************************************* +chr6_PATERNAL 22.95 | 25,705,400 | *********** +chr6_PATERNAL 30.60 | 2,004,300 | +chr6_PATERNAL 38.25 | 555,000 | +chr6_PATERNAL 45.90 | 311,100 | +chr6_PATERNAL 53.55 | 223,700 | +chr6_PATERNAL 61.20 | 144,600 | +chr6_PATERNAL 68.85 | 105,400 | +chr6_PATERNAL 76.50 | 64,200 | +chr6_PATERNAL 84.15 | 24,800 | +chr6_PATERNAL 91.80 | 19,700 | +chr6_PATERNAL 99.45 | 22,600 | +chr6_PATERNAL 107.10 | 17,500 | +chr6_PATERNAL 114.75 | 9,100 | +chr6_PATERNAL 122.40 | 9,300 | +chr6_PATERNAL 130.05 | 2,700 | +chr6_PATERNAL 137.70 | 4,800 | +chr6_PATERNAL 145.35 | 11,400 | +chr6_PATERNAL 153.00 | 3,900 | +chr6_PATERNAL ------------ |------------ | +chr6_PATERNAL N= | 174,411,946 | +chr6_PATERNAL ------------ |------------ | + +test chr7_PATERNAL 160104498 12.137651 5.845794 0.000000 161.000000 158.00 0.00 +First/Last 10 value counts +Value Count +0.00 12900 +1.00 52000 +2.00 253098 +3.00 710400 +4.00 1773000 +5.00 3325000 +6.00 5700200 +7.00 8999600 +8.00 12270700 +9.00 14832100 +152.00 700 +153.00 900 +154.00 300 +155.00 300 +156.00 200 +157.00 600 +158.00 800 +159.00 500 +160.00 400 +161.00 100 +Histogram of bigwig values +chr7_PATERNAL 8.05 | 33,096,898 | **************** +chr7_PATERNAL 16.10 | 107,200,800 | ***************************************************** +chr7_PATERNAL 24.15 | 16,521,000 | ******** +chr7_PATERNAL 32.20 | 1,779,800 | +chr7_PATERNAL 40.25 | 669,800 | +chr7_PATERNAL 48.30 | 338,300 | +chr7_PATERNAL 56.35 | 174,800 | +chr7_PATERNAL 64.40 | 95,400 | +chr7_PATERNAL 72.45 | 44,400 | +chr7_PATERNAL 80.50 | 44,100 | +chr7_PATERNAL 88.55 | 41,300 | +chr7_PATERNAL 96.60 | 34,300 | +chr7_PATERNAL 104.65 | 27,400 | +chr7_PATERNAL 112.70 | 11,900 | +chr7_PATERNAL 120.75 | 2,600 | +chr7_PATERNAL 128.80 | 3,300 | +chr7_PATERNAL 136.85 | 4,600 | +chr7_PATERNAL 144.90 | 2,600 | +chr7_PATERNAL 152.95 | 7,100 | +chr7_PATERNAL 161.00 | 4,100 | +chr7_PATERNAL ------------ |------------ | +chr7_PATERNAL N= | 160,104,498 | +chr7_PATERNAL ------------ |------------ | + +test chr8_PATERNAL 146786846 12.524363 8.394871 0.000000 354.000000 350.00 0.00 +First/Last 10 value counts +Value Count +0.00 12300 +1.00 52500 +2.00 202946 +3.00 619300 +4.00 1469100 +5.00 2779200 +6.00 4960500 +7.00 7414900 +8.00 10268800 +9.00 12975400 +345.00 100 +346.00 600 +347.00 1000 +348.00 1100 +349.00 200 +350.00 600 +351.00 600 +352.00 400 +353.00 200 +354.00 100 +Histogram of bigwig values +chr8_PATERNAL 17.70 | 133,798,546 | ************************************************************************ +chr8_PATERNAL 35.40 | 11,507,900 | ****** +chr8_PATERNAL 53.10 | 812,300 | +chr8_PATERNAL 70.80 | 289,100 | +chr8_PATERNAL 88.50 | 112,600 | +chr8_PATERNAL 106.20 | 88,900 | +chr8_PATERNAL 123.90 | 41,300 | +chr8_PATERNAL 141.60 | 25,700 | +chr8_PATERNAL 159.30 | 32,600 | +chr8_PATERNAL 177.00 | 28,200 | +chr8_PATERNAL 194.70 | 6,800 | +chr8_PATERNAL 212.40 | 3,900 | +chr8_PATERNAL 230.10 | 7,900 | +chr8_PATERNAL 247.80 | 6,900 | +chr8_PATERNAL 265.50 | 6,400 | +chr8_PATERNAL 283.20 | 2,100 | +chr8_PATERNAL 300.90 | 2,200 | +chr8_PATERNAL 318.60 | 2,700 | +chr8_PATERNAL 336.30 | 3,700 | +chr8_PATERNAL 354.00 | 7,100 | +chr8_PATERNAL ------------ |------------ | +chr8_PATERNAL N= | 146,786,846 | +chr8_PATERNAL ------------ |------------ | + +test chr9_PATERNAL 131519477 14.038499 9.058501 0.000000 119.000000 115.00 0.00 +First/Last 10 value counts +Value Count +0.00 21900 +1.00 66300 +2.00 187000 +3.00 531700 +4.00 1309900 +5.00 2467800 +6.00 4377900 +7.00 6440900 +8.00 8773300 +9.00 11077400 +110.00 1500 +111.00 1100 +112.00 300 +113.00 200 +114.00 400 +115.00 400 +116.00 300 +117.00 300 +118.00 100 +119.00 400 +Histogram of bigwig values +chr9_PATERNAL 5.95 | 4,584,600 | ** +chr9_PATERNAL 11.90 | 55,736,800 | ********************************* +chr9_PATERNAL 17.85 | 49,497,077 | ****************************** +chr9_PATERNAL 23.80 | 10,509,600 | ****** +chr9_PATERNAL 29.75 | 3,605,300 | ** +chr9_PATERNAL 35.70 | 2,408,900 | * +chr9_PATERNAL 41.65 | 1,846,300 | * +chr9_PATERNAL 47.60 | 1,153,900 | +chr9_PATERNAL 53.55 | 853,900 | +chr9_PATERNAL 59.50 | 530,300 | +chr9_PATERNAL 65.45 | 293,400 | +chr9_PATERNAL 71.40 | 184,200 | +chr9_PATERNAL 77.35 | 118,600 | +chr9_PATERNAL 83.30 | 87,200 | +chr9_PATERNAL 89.25 | 41,000 | +chr9_PATERNAL 95.20 | 31,400 | +chr9_PATERNAL 101.15 | 17,700 | +chr9_PATERNAL 107.10 | 10,600 | +chr9_PATERNAL 113.05 | 6,800 | +chr9_PATERNAL 119.00 | 1,900 | +chr9_PATERNAL ------------ |------------ | +chr9_PATERNAL N= | 131,519,477 | +chr9_PATERNAL ------------ |------------ | + +test chrY_PATERNAL 62425491 9.837032 7.818467 0.000000 89.000000 89.00 0.00 +First/Last 10 value counts +Value Count +0.00 652100 +1.00 1679900 +2.00 3241900 +3.00 4159300 +4.00 4848491 +5.00 4858200 +6.00 4706700 +7.00 4787800 +8.00 4253900 +9.00 3902200 +80.00 1400 +81.00 1300 +82.00 1000 +83.00 3100 +84.00 3100 +85.00 2500 +86.00 1300 +87.00 2000 +88.00 2100 +89.00 1200 +Histogram of bigwig values +chrY_PATERNAL 4.45 | 14,581,691 | ****************** +chrY_PATERNAL 8.90 | 18,606,600 | *********************** +chrY_PATERNAL 13.35 | 15,618,400 | ******************** +chrY_PATERNAL 17.80 | 6,435,300 | ******** +chrY_PATERNAL 22.25 | 3,464,100 | **** +chrY_PATERNAL 26.70 | 1,274,500 | * +chrY_PATERNAL 31.15 | 1,078,800 | * +chrY_PATERNAL 35.60 | 409,400 | +chrY_PATERNAL 40.05 | 359,700 | +chrY_PATERNAL 44.50 | 235,900 | +chrY_PATERNAL 48.95 | 100,900 | +chrY_PATERNAL 53.40 | 54,200 | +chrY_PATERNAL 57.85 | 63,100 | +chrY_PATERNAL 62.30 | 64,500 | +chrY_PATERNAL 66.75 | 24,300 | +chrY_PATERNAL 71.20 | 23,600 | +chrY_PATERNAL 75.65 | 7,000 | +chrY_PATERNAL 80.10 | 5,900 | +chrY_PATERNAL 84.55 | 8,500 | +chrY_PATERNAL 89.00 | 9,100 | +chrY_PATERNAL ------------ |------------ | +chrY_PATERNAL N= | 62,425,491 | +chrY_PATERNAL ------------ |------------ | +
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/foo.table Wed Jul 24 09:19:08 2024 +0000 @@ -0,0 +1,57 @@ +Descriptive measures +bigwig test +contig Merlin +n 180929 +mean 6354.313736 +std 9951.749936 +min 0.000000 +max 32767.000000 +qtop 24359.00 +qbot noqlo +First/Last 10 value counts +Value Count +0.00 110889 +13.00 30 +22.00 10 +26.00 10 +29.00 10 +40.00 10 +43.00 10 +53.00 10 +57.00 10 +60.00 20 +32721.00 10 +32724.00 10 +32726.00 10 +32728.00 10 +32730.00 10 +32731.00 20 +32737.00 10 +32745.00 10 +32766.00 10 +32767.00 10 +Histogram of bigwig values +Merlin 1638.35 | 114,349 | ************************************************** +Merlin 3276.70 | 3,650 | * +Merlin 4915.05 | 3,620 | * +Merlin 6553.40 | 3,570 | * +Merlin 8191.75 | 3,570 | * +Merlin 9830.10 | 3,410 | * +Merlin 11468.45 | 3,610 | * +Merlin 13106.80 | 3,170 | * +Merlin 14745.15 | 3,310 | * +Merlin 16383.50 | 3,390 | * +Merlin 18021.85 | 3,270 | * +Merlin 19660.20 | 3,680 | * +Merlin 21298.55 | 3,560 | * +Merlin 22936.90 | 3,490 | * +Merlin 24575.25 | 3,530 | * +Merlin 26213.60 | 3,460 | * +Merlin 27851.95 | 3,470 | * +Merlin 29490.30 | 3,500 | * +Merlin 31128.65 | 3,920 | * +Merlin 32767.00 | 3,400 | * +Merlin ------------ |------------ | +Merlin N= | 180,929 | +Merlin ------------ |------------ | +