diff plotly_blast_tool/README.md @ 8:186734f1d63c draft default tip

Replace plotly_blast_tool content with blasttools_search. :(
author fubar
date Fri, 04 Aug 2023 01:57:51 +0000
parents bb99f2c0e358
children
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--- a/plotly_blast_tool/README.md	Fri Aug 04 01:52:13 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
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-# plotly_blast_tool
-
-## Install to your Galaxy server from the toolshed - search for plotly_blast_tool owned by fubar2
-
-### Example interactive plots and more at https://lazarus.name/demo/
-
-#### Non interactive screen grab of the tool output
-![Plotly tabular non-interactive screengrab](pbsample.png)
-
-Specialised version of the generalised ![plotly_tabular_tool](https://github.com/fubar2/plotly_tabular_tool), but designed
-for 25 column Galaxy blastn search outputs.
-
-It uses the same code, but adds a default header and auto-transformation of the evalue column -log10(x) to make them more like the bitscore
-
-Plotly.express makes a lot of clever design decisions.
-Unfortunately, it gets totally confused with very small floats in scientific notation. Treats columns with 5.00e-204 as strings or something, so
-strange and probably uninformative axes and plots will probably result if you try a blast evalue column without transformation.
-Note that all columns used for colour (legend) and the x/y axis tickmarks are truncated because they can squish up the plot.
-*..* is appended at the truncation.
-
-## Tool made with the Galaxy ToolFactory: https://github.com/fubar2/galaxy_tf_overlay
-The current release includes this and a generic tabular version, plus a java .jar wrapper, in an "advanced example" history 
-where they can be rerun and changed. They are also generated by an "advanced expample workflow"
-where they can be regenerated if the input data sets are available.
-