Mercurial > repos > fubar > blasttools_search_test
diff plotly_blast_tool/README.md @ 8:186734f1d63c draft default tip
Replace plotly_blast_tool content with blasttools_search. :(
author | fubar |
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date | Fri, 04 Aug 2023 01:57:51 +0000 |
parents | bb99f2c0e358 |
children |
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--- a/plotly_blast_tool/README.md Fri Aug 04 01:52:13 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,25 +0,0 @@ -# plotly_blast_tool - -## Install to your Galaxy server from the toolshed - search for plotly_blast_tool owned by fubar2 - -### Example interactive plots and more at https://lazarus.name/demo/ - -#### Non interactive screen grab of the tool output -![Plotly tabular non-interactive screengrab](pbsample.png) - -Specialised version of the generalised ![plotly_tabular_tool](https://github.com/fubar2/plotly_tabular_tool), but designed -for 25 column Galaxy blastn search outputs. - -It uses the same code, but adds a default header and auto-transformation of the evalue column -log10(x) to make them more like the bitscore - -Plotly.express makes a lot of clever design decisions. -Unfortunately, it gets totally confused with very small floats in scientific notation. Treats columns with 5.00e-204 as strings or something, so -strange and probably uninformative axes and plots will probably result if you try a blast evalue column without transformation. -Note that all columns used for colour (legend) and the x/y axis tickmarks are truncated because they can squish up the plot. -*..* is appended at the truncation. - -## Tool made with the Galaxy ToolFactory: https://github.com/fubar2/galaxy_tf_overlay -The current release includes this and a generic tabular version, plus a java .jar wrapper, in an "advanced example" history -where they can be rerun and changed. They are also generated by an "advanced expample workflow" -where they can be regenerated if the input data sets are available. -