Mercurial > repos > fubar > egapx_runner
diff examples/input_D_farinae_minimal.yaml @ 0:d9c5c5b87fec draft
planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4
| author | fubar |
|---|---|
| date | Sat, 03 Aug 2024 11:16:53 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/examples/input_D_farinae_minimal.yaml Sat Aug 03 11:16:53 2024 +0000 @@ -0,0 +1,16 @@ +# This is a very minimal example of EGAPx, it fits into 4 CPU cores and 6GB of memory. +# To be able to do this, we culled the input files and some stages of execution. +# To limit the requirements you also need to use -e docker_minimal + +genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz +reads: + - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.1 + - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.2 + - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.1 + - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.2 +taxid: 6954 +proteins: [] +hmm: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/gnomon/hmm_parameters/6956.params +tasks: + star_wnode: + star_wnode: -cpus-per-worker 4