diff ui/assets/config/executor/aws.config @ 0:d9c5c5b87fec draft

planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ui/assets/config/executor/aws.config	Sat Aug 03 11:16:53 2024 +0000
@@ -0,0 +1,25 @@
+process {
+    executor = 'awsbatch'
+    // Queue points to a compute environment with a mix of r6i.2xlarge, r6i.4xlarge, and r6i.8xlarge
+    // with 200GB EBS gp3 disks, using modified Amazon Linux 2 image with aws cli and docker installed
+    // as described in https://www.nextflow.io/docs/latest/aws.html
+    queue = 'egapx-small-and-medium-ds'
+    // If jobs fail with the message 'out of disk space', create compute environment
+    // with r6i.4xlarge instances with 1000GB EBS gp3 disk, connect a queue to it
+    // and put the queue name here
+    withLabel: 'large_disk' {
+        queue = 'egapx-large-disk'
+    }
+}
+
+aws {
+    region = 'us-east-2'
+    batch {
+        cliPath = '/home/ec2-user/miniconda/bin/aws'
+        maxTransferAttempts = 3
+    }
+    client {
+        maxErrorRetry = 3
+        socketTimeout = 3600000 // 1 hours in milliseconds
+    }
+}